RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 APLP1P51693 650 aa13.38□□□□□ -0.27
RFFL-203ENST00000413582 COL5A3P25940 1745 aaPredicted RBP13.38□□□□□ -0.27
RFFL-203ENST00000413582 ARFGEF1Q9Y6D6 1849 aa13.37□□□□□ -0.27
RFFL-203ENST00000413582 C4AP0C0L4 1744 aa13.37□□□□□ -0.27
RFFL-203ENST00000413582 TMOD3Q9NYL9 352 aa13.37□□□□□ -0.27
RFFL-203ENST00000413582 ASAP1Q9ULH1 1129 aa13.37□□□□□ -0.27
RFFL-203ENST00000413582 TOMM70O94826 608 aa13.36□□□□□ -0.27
RFFL-203ENST00000413582 TMF1P82094 1093 aa13.36□□□□□ -0.27
RFFL-203ENST00000413582 DNAJC5GQ8N7S2 189 aa13.36□□□□□ -0.27
RFFL-203ENST00000413582 SPG7Q9UQ90 795 aa13.36□□□□□ -0.27
RFFL-203ENST00000413582 ATP6V1AP38606 617 aa13.35□□□□□ -0.27
RFFL-203ENST00000413582 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.27
RFFL-203ENST00000413582 MYH14Q7Z406 1995 aaKnown RBP13.34□□□□□ -0.27
RFFL-203ENST00000413582 PHKG2P15735 406 aa13.34□□□□□ -0.27
RFFL-203ENST00000413582 TGFB2P61812 414 aa13.34□□□□□ -0.27
RFFL-203ENST00000413582 NMRK2Q9NPI5 230 aa13.34□□□□□ -0.27
RFFL-203ENST00000413582 ATG3Q9NT62 314 aa13.34□□□□□ -0.27
RFFL-203ENST00000413582 BCS1LQ9Y276 419 aa13.34□□□□□ -0.27
RFFL-203ENST00000413582 PLEKHG2Q9H7P9 1386 aa13.33□□□□□ -0.27
RFFL-203ENST00000413582 A0A0G2JLW4 131 aa13.33□□□□□ -0.28
RFFL-203ENST00000413582 EYA1Q99502 592 aa13.33□□□□□ -0.28
RFFL-203ENST00000413582 CARD14Q9BXL6 1004 aa13.33□□□□□ -0.28
RFFL-203ENST00000413582 WASHC2AQ641Q2 1341 aa13.33□□□□□ -0.28
RFFL-203ENST00000413582 IFNL2Q8IZJ0 200 aa13.32□□□□□ -0.28
RFFL-203ENST00000413582 SLC4A9Q96Q91 983 aa13.32□□□□□ -0.28
RFFL-203ENST00000413582 PPM1GO15355 546 aaPredicted RBP13.31□□□□□ -0.28
RFFL-203ENST00000413582 DPEP1P16444 411 aa13.31□□□□□ -0.28
RFFL-203ENST00000413582 ARHGAP27Q6ZUM4 889 aa13.31□□□□□ -0.28
RFFL-203ENST00000413582 NLGN1Q8N2Q7 840 aa13.31□□□□□ -0.28
RFFL-203ENST00000413582 RTCBQ9Y3I0 505 aaKnown RBP13.31□□□□□ -0.28
RFFL-203ENST00000413582 CNTNAP4Q9C0A0 1308 aa13.31□□□□□ -0.28
RFFL-203ENST00000413582 FCHSD2O94868 740 aa13.3□□□□□ -0.28
RFFL-203ENST00000413582 GYS1P13807 737 aa13.3□□□□□ -0.28
RFFL-203ENST00000413582 TRAPPC3LQ5T215 181 aa13.3□□□□□ -0.28
RFFL-203ENST00000413582 RBM46Q8TBY0 533 aaKnown RBP13.3□□□□□ -0.28
RFFL-203ENST00000413582 ARHGEF1Q92888 912 aaKnown RBP13.3□□□□□ -0.28
RFFL-203ENST00000413582 CCDC87Q9NVE4 849 aa13.3□□□□□ -0.28
RFFL-203ENST00000413582 TNRC6CQ9HCJ0 1690 aaKnown RBP13.3□□□□□ -0.28
RFFL-203ENST00000413582 KCPQ6ZWJ8 1503 aa13.29□□□□□ -0.28
RFFL-203ENST00000413582 CDCA8Q53HL2 280 aa13.29□□□□□ -0.28
RFFL-203ENST00000413582 C9orf131Q5VYM1 1079 aa13.29□□□□□ -0.28
RFFL-203ENST00000413582 SBF1O95248 1867 aa13.29□□□□□ -0.28
RFFL-203ENST00000413582 KDM6AO15550 1401 aaPredicted RBP13.29□□□□□ -0.28
RFFL-203ENST00000413582 KCNA3P22001 575 aa13.28□□□□□ -0.28
RFFL-203ENST00000413582 HTRA3P83110 453 aa13.28□□□□□ -0.28
RFFL-203ENST00000413582 RC3H1Q5TC82 1133 aaKnown RBP13.28□□□□□ -0.28
RFFL-203ENST00000413582 ADAMTS7Q9UKP4 1686 aa13.28□□□□□ -0.28
RFFL-203ENST00000413582 TJP1Q07157 1748 aa13.27□□□□□ -0.28
RFFL-203ENST00000413582 RPS6KA4O75676 772 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 EIF4A2Q14240 407 aaKnown RBP13.27□□□□□ -0.29
RFFL-203ENST00000413582 JMYQ8N9B5 988 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 KLRG1Q96E93 195 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 DCAF5Q96JK2 942 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 RBM42Q9BTD8 480 aaKnown RBP13.27□□□□□ -0.29
RFFL-203ENST00000413582 POLKQ9UBT6 870 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 PARP3Q9Y6F1 533 aa13.27□□□□□ -0.29
RFFL-203ENST00000413582 ERVV-2B6SEH9 535 aa13.26□□□□□ -0.29
RFFL-203ENST00000413582 RFC4P35249 363 aa13.26□□□□□ -0.29
RFFL-203ENST00000413582 FSTL1Q12841 308 aa13.26□□□□□ -0.29
RFFL-203ENST00000413582 PCNTO95613 3336 aa13.25□□□□□ -0.29
RFFL-203ENST00000413582 COL13A1Q5TAT6 717 aaPredicted RBP13.25□□□□□ -0.29
RFFL-203ENST00000413582 C16orf71Q8IYS4 520 aaPredicted RBP13.25□□□□□ -0.29
RFFL-203ENST00000413582 KDM2BQ8NHM5 1336 aa13.24□□□□□ -0.29
RFFL-203ENST00000413582 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
RFFL-203ENST00000413582 DDR1Q08345 913 aa13.24□□□□□ -0.29
RFFL-203ENST00000413582 RNF181Q9P0P0 153 aa13.24□□□□□ -0.29
RFFL-203ENST00000413582 PIM2Q9P1W9 311 aa13.24□□□□□ -0.29
RFFL-203ENST00000413582 HSP90AB1P08238 724 aaKnown RBP13.23□□□□□ -0.29
RFFL-203ENST00000413582 CRKLP46109 303 aaKnown RBP13.23□□□□□ -0.29
RFFL-203ENST00000413582 DALRD3Q5D0E6 543 aaKnown RBP13.23□□□□□ -0.29
RFFL-203ENST00000413582 PCGF6Q9BYE7 350 aa13.23□□□□□ -0.29
RFFL-203ENST00000413582 SRP68Q9UHB9 627 aaKnown RBP13.23□□□□□ -0.29
RFFL-203ENST00000413582 DLEC1Q9Y238 1755 aa13.22□□□□□ -0.29
RFFL-203ENST00000413582 FKBP8Q14318 412 aa13.22□□□□□ -0.29
RFFL-203ENST00000413582 ZNF530Q6P9A1 599 aaPredicted RBP13.22□□□□□ -0.29
RFFL-203ENST00000413582 AFDNP55196 1824 aaKnown RBP13.22□□□□□ -0.29
RFFL-203ENST00000413582 SCN11AQ9UI33 1791 aa13.22□□□□□ -0.29
RFFL-203ENST00000413582 TIAM2Q8IVF5 1701 aa13.22□□□□□ -0.29
RFFL-203ENST00000413582 CHRNA5P30532 468 aa13.21□□□□□ -0.29
RFFL-203ENST00000413582 CABP4P57796 275 aa13.21□□□□□ -0.29
RFFL-203ENST00000413582 NRXN2Q9P2S2 1712 aa13.21□□□□□ -0.3
RFFL-203ENST00000413582 POLRMTO00411 1230 aaKnown RBP13.2□□□□□ -0.3
RFFL-203ENST00000413582 PTCD1O75127 700 aaKnown RBP13.2□□□□□ -0.3
RFFL-203ENST00000413582 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
RFFL-203ENST00000413582 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
RFFL-203ENST00000413582 SMC1BQ8NDV3 1235 aa13.2□□□□□ -0.3
RFFL-203ENST00000413582 RRAGCQ9HB90 399 aa13.2□□□□□ -0.3
RFFL-203ENST00000413582 ZC3H4Q9UPT8 1303 aaKnown RBP13.19□□□□□ -0.3
RFFL-203ENST00000413582 AMOTQ4VCS5 1084 aa13.19□□□□□ -0.3
RFFL-203ENST00000413582 CAPN15O75808 1086 aa13.18□□□□□ -0.3
RFFL-203ENST00000413582 RASSF7Q02833 373 aa13.18□□□□□ -0.3
RFFL-203ENST00000413582 PPP4R3CPQ6ZMV5 832 aa13.18□□□□□ -0.3
RFFL-203ENST00000413582 TNS4Q8IZW8 715 aa13.18□□□□□ -0.3
RFFL-203ENST00000413582 CCDC88AQ3V6T2 1871 aa13.18□□□□□ -0.3
RFFL-203ENST00000413582 MRC1P22897 1456 aa13.17□□□□□ -0.3
RFFL-203ENST00000413582 TM4SF1P30408 202 aa13.17□□□□□ -0.3
RFFL-203ENST00000413582 MTHFSP49914 203 aa13.17□□□□□ -0.3
RFFL-203ENST00000413582 INTS5Q6P9B9 1019 aaKnown RBP13.17□□□□□ -0.3
RFFL-203ENST00000413582 AEBP1Q8IUX7 1158 aa13.17□□□□□ -0.3
RFFL-203ENST00000413582 VIRMAQ69YN4 1812 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms