RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FBF1Q8TES7 1133 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 FAM177A1Q8N128 213 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 CCDC110Q8TBZ0 833 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 NAP1L3Q99457 506 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 LMNTD2Q8IXW0 634 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 CAPN2P17655 700 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 FKBP5Q13451 457 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-206ENST00000409809 CCDC155Q8N6L0 562 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 RIPK4P57078 832 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 WDR63Q8IWG1 891 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 CTNNA3Q9UI47 895 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 UBE2HP62256 183 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 VPS37DQ86XT2 251 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 FSD1Q9BTV5 496 aa14.94□□□□□ -0.02
COL6A3-206ENST00000409809 HOMEZQ8IX15 550 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 SPECC1Q5M775 1068 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 WWC2Q6AWC2 1192 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 LACTBP83111 547 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-206ENST00000409809 TTC5Q8N0Z6 440 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 PDZRN3Q9UPQ7 1066 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 NKTRP30414 1462 aaKnown RBP14.93□□□□□ -0.02
COL6A3-206ENST00000409809 KANK3Q6NY19 840 aa14.93□□□□□ -0.02
COL6A3-206ENST00000409809 CTAGE1Q96RT6 745 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 GOLGA1Q92805 767 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 GNAI2P04899 355 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 PRPHP41219 470 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 TSNAXIP1Q2TAA8 658 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 SLU7O95391 586 aaKnown RBP14.92□□□□□ -0.02
COL6A3-206ENST00000409809 VCXQ9H320 206 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 FYCO1Q9BQS8 1478 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 KRT18P05783 430 aaKnown RBP14.92□□□□□ -0.02
COL6A3-206ENST00000409809 CEP128Q6ZU80 1094 aa14.92□□□□□ -0.02
COL6A3-206ENST00000409809 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.91□□□□□ -0.02
COL6A3-206ENST00000409809 ADCY5O95622 1261 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 ZSCAN25Q6NSZ9 544 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 CCDC158Q5M9N0 1113 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 CCDC30Q5VVM6 783 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 CACNA2D3Q8IZS8 1091 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 PANK1Q8TE04 598 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 RASAL2Q9UJF2 1139 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 MVPQ14764 893 aaKnown RBP14.91□□□□□ -0.02
COL6A3-206ENST00000409809 RRP7AQ9Y3A4 280 aaKnown RBP14.91□□□□□ -0.02
COL6A3-206ENST00000409809 PPFIA3O75145 1194 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 CHD1LQ86WJ1 897 aa14.91□□□□□ -0.02
COL6A3-206ENST00000409809 BLOC1S2Q6QNY1 142 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 HDXQ7Z353 690 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 ATP11AP98196 1134 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 GSTTP1A0A1W2PQM5 241 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 C10orf67Q8IYJ2 551 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 LRSAM1Q6UWE0 723 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 SMC6Q96SB8 1091 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 KIF4AO95239 1232 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 NUP133Q8WUM0 1156 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 RSPH14Q9UHP6 348 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 CTAGE9A4FU28 777 aa14.9□□□□□ -0.02
COL6A3-206ENST00000409809 FERP16591 822 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 MAP3K9P80192 1104 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 NACAP1Q9BZK3 213 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 CSB-PGBD3P0DP91 1061 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 MAP2K2P36507 400 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 LUC7L3O95232 432 aaKnown RBP14.89□□□□□ -0.03
COL6A3-206ENST00000409809 NOLC1Q14978 699 aaKnown RBP eCLIP14.89□□□□□ -0.03
COL6A3-206ENST00000409809 RBBP5Q15291 538 aaKnown RBP14.89□□□□□ -0.03
COL6A3-206ENST00000409809 MICALL1Q8N3F8 863 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 DDX23Q9BUQ8 820 aaKnown RBP14.89□□□□□ -0.03
COL6A3-206ENST00000409809 RPGRIP1LQ68CZ1 1315 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 CROCCP2Q86T23 111 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC172P0C7W6 258 aa14.89□□□□□ -0.03
COL6A3-206ENST00000409809 KANK4Q5T7N3 995 aaPredicted RBP14.89□□□□□ -0.03
COL6A3-206ENST00000409809 GTF2E1P29083 439 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-206ENST00000409809 GBP1P32455 592 aa14.88□□□□□ -0.03
COL6A3-206ENST00000409809 CEP57Q86XR8 500 aa14.88□□□□□ -0.03
COL6A3-206ENST00000409809 VCX3BQ9H321 246 aa14.88□□□□□ -0.03
COL6A3-206ENST00000409809 VGFO15240 615 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-206ENST00000409809 PPFIBP2Q8ND30 876 aa14.88□□□□□ -0.03
COL6A3-206ENST00000409809 NAA25Q14CX7 972 aa14.88□□□□□ -0.03
COL6A3-206ENST00000409809 WHAMMP3Q1A5X7 153 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 ZNF622Q969S3 477 aaKnown RBP eCLIP14.87□□□□□ -0.03
COL6A3-206ENST00000409809 TSG101Q99816 390 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 TANGO6Q9C0B7 1094 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC113Q9H0I3 377 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 FAM114A2Q9NRY5 505 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 LRCH2Q5VUJ6 765 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 FAM76AQ8TAV0 307 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CTAGE15A4D2H0 777 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CTAGE8P0CG41 777 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 NBPF8Q3BBV2 869 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 GRIPAP1Q4V328 841 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC174Q6PII3 467 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CTAGE6Q86UF2 777 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CTAGE4Q8IX94 777 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC114Q96M63 670 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 PDRG1Q9NUG6 133 aa14.87□□□□□ -0.03
COL6A3-206ENST00000409809 CCDC196A0A1B0GTZ2 297 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 GAPVD1Q14C86 1478 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 AP1ARQ63HQ0 302 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 HYPKQ9NX55 129 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 SAMD15Q9P1V8 674 aa14.86□□□□□ -0.03
COL6A3-206ENST00000409809 IKBKGQ9Y6K9 419 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms