RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CSB-PGBD3P0DP91 1061 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 CCT4P50991 539 aaKnown RBP25.98■■□□□ 1.75
USP39-203ENST00000409470 FLIIQ13045 1269 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 RAPGEF4Q8WZA2 1011 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 HDGFL1Q5TGJ6 251 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 ANKRD45Q5TZF3 282 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 SLAIN2Q9P270 581 aa25.98■■□□□ 1.75
USP39-203ENST00000409470 EIF4A1P60842 406 aaKnown RBP25.97■■□□□ 1.75
USP39-203ENST00000409470 FKBP5Q13451 457 aaPredicted RBP25.97■■□□□ 1.75
USP39-203ENST00000409470 CHRNA2Q15822 529 aa25.97■■□□□ 1.75
USP39-203ENST00000409470 MEIS3Q99687 375 aa25.95■■□□□ 1.75
USP39-203ENST00000409470 COL18A1P39060 1754 aa25.95■■□□□ 1.74
USP39-203ENST00000409470 KDM3BQ7LBC6 1761 aa25.95■■□□□ 1.74
USP39-203ENST00000409470 OVOS2A0A0G2JMS6 1433 aa25.95■■□□□ 1.74
USP39-203ENST00000409470 CACNA1FO60840 1977 aa25.95■■□□□ 1.74
USP39-203ENST00000409470 SEC24BO95487 1268 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 TATP17735 454 aaPredicted RBP25.93■■□□□ 1.74
USP39-203ENST00000409470 RPAP2Q8IXW5 612 aaPredicted RBP25.93■■□□□ 1.74
USP39-203ENST00000409470 ANKRD44Q8N8A2 993 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 KCNQ3O43525 872 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 HOXB7P09629 217 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 EIF2S2P20042 333 aaKnown RBP25.93■■□□□ 1.74
USP39-203ENST00000409470 CHMP4AQ9BY43 222 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 CRYBG1Q9Y4K1 1723 aa25.93■■□□□ 1.74
USP39-203ENST00000409470 ABCC6O95255 1503 aa25.92■■□□□ 1.74
USP39-203ENST00000409470 CPDO75976 1380 aa25.92■■□□□ 1.74
USP39-203ENST00000409470 CEP85Q6P2H3 762 aa25.92■■□□□ 1.74
USP39-203ENST00000409470 ATP10DQ9P241 1426 aa25.91■■□□□ 1.74
USP39-203ENST00000409470 UPF2Q9HAU5 1272 aaKnown RBP25.9■■□□□ 1.74
USP39-203ENST00000409470 SPG7Q9UQ90 795 aa25.9■■□□□ 1.74
USP39-203ENST00000409470 SOS2Q07890 1332 aaPredicted RBP25.89■■□□□ 1.74
USP39-203ENST00000409470 DCTPP1Q9H773 170 aa25.89■■□□□ 1.74
USP39-203ENST00000409470 PHAXQ9H814 394 aaKnown RBP25.87■■□□□ 1.73
USP39-203ENST00000409470 MEGF6O75095 1541 aa25.86■■□□□ 1.73
USP39-203ENST00000409470 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.86■■□□□ 1.739e-7■□□□□ 10
USP39-203ENST00000409470 CHPF2Q9P2E5 772 aa25.86■■□□□ 1.73
USP39-203ENST00000409470 PRDM11Q9NQV5 511 aa25.85■■□□□ 1.73
USP39-203ENST00000409470 GNAI2P04899 355 aa25.85■■□□□ 1.73
USP39-203ENST00000409470 DAXXQ9UER7 740 aaPredicted RBP25.85■■□□□ 1.73
USP39-203ENST00000409470 HMMRO75330 724 aa25.84■■□□□ 1.73
USP39-203ENST00000409470 PHKG2P15735 406 aa25.84■■□□□ 1.73
USP39-203ENST00000409470 GNAI3P08754 354 aa25.83■■□□□ 1.73
USP39-203ENST00000409470 PXDNLA1KZ92 1463 aa25.83■■□□□ 1.73
USP39-203ENST00000409470 ADAMTS7Q9UKP4 1686 aa25.83■■□□□ 1.73
USP39-203ENST00000409470 IFNL2Q8IZJ0 200 aa25.83■■□□□ 1.73
USP39-203ENST00000409470 SIPA1L3O60292 1781 aaPredicted RBP25.82■■□□□ 1.72
USP39-203ENST00000409470 GIGYF1O75420 1035 aaPredicted RBP25.81■■□□□ 1.72
USP39-203ENST00000409470 PLEKHG2Q9H7P9 1386 aa25.81■■□□□ 1.72
USP39-203ENST00000409470 BMP2KLQ5H9B9 411 aa25.8■■□□□ 1.72
USP39-203ENST00000409470 KDM6AO15550 1401 aaPredicted RBP25.8■■□□□ 1.72
USP39-203ENST00000409470 SLC52A2Q9HAB3 445 aa25.8■■□□□ 1.72
USP39-203ENST00000409470 DBF4Q9UBU7 674 aaPredicted RBP25.8■■□□□ 1.72
USP39-203ENST00000409470 BCL11AQ9H165 835 aa25.79■■□□□ 1.72
USP39-203ENST00000409470 N4BP2Q86UW6 1770 aaPredicted RBP25.78■■□□□ 1.72
USP39-203ENST00000409470 HEG1Q9ULI3 1381 aa25.78■■□□□ 1.72
USP39-203ENST00000409470 SCN11AQ9UI33 1791 aa25.78■■□□□ 1.72
USP39-203ENST00000409470 ANXA1P04083 346 aa25.78■■□□□ 1.72
USP39-203ENST00000409470 TOM1L2Q6ZVM7 507 aa25.77■■□□□ 1.72
USP39-203ENST00000409470 TBC1D32Q96NH3 1257 aa25.77■■□□□ 1.72
USP39-203ENST00000409470 WDR17Q8IZU2 1322 aa25.77■■□□□ 1.72
USP39-203ENST00000409470 MFAP1P55081 439 aaKnown RBP25.76■■□□□ 1.72
USP39-203ENST00000409470 NFATC2IPQ8NCF5 419 aa25.76■■□□□ 1.72
USP39-203ENST00000409470 SRCIN1Q9C0H9 1055 aa25.76■■□□□ 1.72
USP39-203ENST00000409470 APBB1O00213 710 aa25.76■■□□□ 1.71
USP39-203ENST00000409470 SLC4A3P48751 1232 aa25.76■■□□□ 1.71
USP39-203ENST00000409470 ZNF790Q6PG37 636 aa25.76■■□□□ 1.71
USP39-203ENST00000409470 DCAF5Q96JK2 942 aa25.76■■□□□ 1.71
USP39-203ENST00000409470 PI4KAP2A4QPH2 592 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 CYP27B1O15528 508 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 PI4KAP1Q8N8J0 262 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 DNAAF4Q8WXU2 420 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 PRAMEF22A3QJZ6 481 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 HSP90AB1P08238 724 aaKnown RBP25.75■■□□□ 1.71
USP39-203ENST00000409470 UBTFL1P0CB47 393 aaPredicted RBP25.75■■□□□ 1.71
USP39-203ENST00000409470 SLC39A6Q13433 755 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 USP44Q9H0E7 712 aa25.75■■□□□ 1.71
USP39-203ENST00000409470 PKD1L3Q7Z443 1732 aa25.74■■□□□ 1.71
USP39-203ENST00000409470 PLEKHM2Q8IWE5 1019 aa25.74■■□□□ 1.71
USP39-203ENST00000409470 LRRFIP2Q9Y608 721 aaKnown RBP25.73■■□□□ 1.71
USP39-203ENST00000409470 NHSL1Q5SYE7 1610 aa25.73■■□□□ 1.71
USP39-203ENST00000409470 SMARCA5O60264 1052 aaPredicted RBP25.72■■□□□ 1.71
USP39-203ENST00000409470 ATP8B2P98198 1209 aa25.72■■□□□ 1.71
USP39-203ENST00000409470 C16orf71Q8IYS4 520 aaPredicted RBP25.72■■□□□ 1.71
USP39-203ENST00000409470 ABCA3Q99758 1704 aa25.72■■□□□ 1.71
USP39-203ENST00000409470 COL5A2P05997 1499 aaPredicted RBP25.72■■□□□ 1.71
USP39-203ENST00000409470 PROSER3Q2NL68 480 aa25.71■■□□□ 1.71
USP39-203ENST00000409470 HYPKQ9NX55 129 aa25.71■■□□□ 1.71
USP39-203ENST00000409470 BEND3Q5T5X7 828 aa25.7■■□□□ 1.7
USP39-203ENST00000409470 C22orf23Q9BZE7 217 aa25.7■■□□□ 1.7
USP39-203ENST00000409470 ADCY9O60503 1353 aa25.69■■□□□ 1.7
USP39-203ENST00000409470 CABP4P57796 275 aa25.69■■□□□ 1.7
USP39-203ENST00000409470 TTC5Q8N0Z6 440 aa25.69■■□□□ 1.7
USP39-203ENST00000409470 PNMA6EA0A0J9YXQ4 647 aa25.68■■□□□ 1.7
USP39-203ENST00000409470 EVA1CP58658 441 aa25.68■■□□□ 1.7
USP39-203ENST00000409470 STRN4Q9NRL3 753 aa25.68■■□□□ 1.7
USP39-203ENST00000409470 PARP4Q9UKK3 1724 aaKnown RBP25.68■■□□□ 1.7
USP39-203ENST00000409470 BECN1Q14457 450 aa25.68■■□□□ 1.7
USP39-203ENST00000409470 ZCRB1Q8TBF4 217 aaKnown RBP25.68■■□□□ 1.7
USP39-203ENST00000409470 DDX21Q9NR30 783 aaKnown RBP eCLIP25.68■■□□□ 1.7
USP39-203ENST00000409470 EXOC6BQ9Y2D4 811 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms