RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 NMRK2Q9NPI5 230 aa23.3■■□□□ 1.32
CHMP3-203ENST00000409225 KIAA1551Q9HCM1 1747 aa23.3■■□□□ 1.32
CHMP3-203ENST00000409225 TGFB2P61812 414 aa23.29■■□□□ 1.32
CHMP3-203ENST00000409225 NCAPD2Q15021 1401 aa23.29■■□□□ 1.32
CHMP3-203ENST00000409225 KIF13BQ9NQT8 1826 aa23.29■■□□□ 1.32
CHMP3-203ENST00000409225 ATG3Q9NT62 314 aa23.27■■□□□ 1.32
CHMP3-203ENST00000409225 C10orf71Q711Q0 1435 aa23.26■■□□□ 1.31
CHMP3-203ENST00000409225 TRAPPC3LQ5T215 181 aa23.26■■□□□ 1.31
CHMP3-203ENST00000409225 RTCBQ9Y3I0 505 aaKnown RBP23.26■■□□□ 1.31
CHMP3-203ENST00000409225 FCHSD2O94868 740 aa23.25■■□□□ 1.31
CHMP3-203ENST00000409225 PHKG2P15735 406 aa23.25■■□□□ 1.31
CHMP3-203ENST00000409225 DPEP1P16444 411 aa23.25■■□□□ 1.31
CHMP3-203ENST00000409225 IFNL2Q8IZJ0 200 aa23.25■■□□□ 1.31
CHMP3-203ENST00000409225 NLGN1Q8N2Q7 840 aa23.25■■□□□ 1.31
CHMP3-203ENST00000409225 EYA1Q99502 592 aa23.24■■□□□ 1.31
CHMP3-203ENST00000409225 CCDC87Q9NVE4 849 aa23.24■■□□□ 1.31
CHMP3-203ENST00000409225 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.24■■□□□ 1.312e-6■■■□□ 16.1
CHMP3-203ENST00000409225 WDR90Q96KV7 1748 aa23.22■■□□□ 1.31
CHMP3-203ENST00000409225 HTRA3P83110 453 aa23.22■■□□□ 1.31
CHMP3-203ENST00000409225 C9orf131Q5VYM1 1079 aa23.22■■□□□ 1.31
CHMP3-203ENST00000409225 C16orf71Q8IYS4 520 aaPredicted RBP23.22■■□□□ 1.31
CHMP3-203ENST00000409225 RBM46Q8TBY0 533 aaKnown RBP23.22■■□□□ 1.31
CHMP3-203ENST00000409225 ARHGEF1Q92888 912 aaKnown RBP23.22■■□□□ 1.31
CHMP3-203ENST00000409225 RBM42Q9BTD8 480 aaKnown RBP23.22■■□□□ 1.31
CHMP3-203ENST00000409225 CARD14Q9BXL6 1004 aa23.22■■□□□ 1.31
CHMP3-203ENST00000409225 KDRP35968 1356 aa23.22■■□□□ 1.31
CHMP3-203ENST00000409225 PARP3Q9Y6F1 533 aa23.21■■□□□ 1.31
CHMP3-203ENST00000409225 WASHC2AQ641Q2 1341 aa23.21■■□□□ 1.31
CHMP3-203ENST00000409225 C4AP0C0L4 1744 aa23.2■■□□□ 1.3
CHMP3-203ENST00000409225 GYS1P13807 737 aa23.2■■□□□ 1.3
CHMP3-203ENST00000409225 SLC4A9Q96Q91 983 aa23.2■■□□□ 1.3
CHMP3-203ENST00000409225 CDCA8Q53HL2 280 aa23.19■■□□□ 1.3
CHMP3-203ENST00000409225 ANKRD26Q9UPS8 1709 aa23.19■■□□□ 1.3
CHMP3-203ENST00000409225 ADRA2BP18089 450 aa23.18■■□□□ 1.3
CHMP3-203ENST00000409225 RFC4P35249 363 aa23.18■■□□□ 1.3
CHMP3-203ENST00000409225 KLRG1Q96E93 195 aa23.18■■□□□ 1.3
CHMP3-203ENST00000409225 PLEKHG2Q9H7P9 1386 aa23.17■■□□□ 1.3
CHMP3-203ENST00000409225 RC3H1Q5TC82 1133 aaKnown RBP23.17■■□□□ 1.3
CHMP3-203ENST00000409225 BRCA1P38398 1863 aaKnown RBP23.17■■□□□ 1.3
CHMP3-203ENST00000409225 KCNA3P22001 575 aa23.16■■□□□ 1.3
CHMP3-203ENST00000409225 COL13A1Q5TAT6 717 aaPredicted RBP23.16■■□□□ 1.3
CHMP3-203ENST00000409225 CNTNAP4Q9C0A0 1308 aa23.15■■□□□ 1.3
CHMP3-203ENST00000409225 KCPQ6ZWJ8 1503 aa23.15■■□□□ 1.3
CHMP3-203ENST00000409225 RPS6KA4O75676 772 aa23.15■■□□□ 1.3
CHMP3-203ENST00000409225 COL5A3P25940 1745 aaPredicted RBP23.14■■□□□ 1.3
CHMP3-203ENST00000409225 FSTL1Q12841 308 aa23.14■■□□□ 1.29
CHMP3-203ENST00000409225 PIM2Q9P1W9 311 aa23.14■■□□□ 1.29
CHMP3-203ENST00000409225 ARFGEF1Q9Y6D6 1849 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 ERVV-2B6SEH9 535 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 CAPN15O75808 1086 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 JMYQ8N9B5 988 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 RNF181Q9P0P0 153 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 POLKQ9UBT6 870 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 ZNF831Q5JPB2 1677 aa23.13■■□□□ 1.29
CHMP3-203ENST00000409225 KDM2BQ8NHM5 1336 aa23.12■■□□□ 1.29
CHMP3-203ENST00000409225 EIF4A2Q14240 407 aaKnown RBP23.12■■□□□ 1.29
CHMP3-203ENST00000409225 DALRD3Q5D0E6 543 aaKnown RBP23.12■■□□□ 1.29
CHMP3-203ENST00000409225 DCAF5Q96JK2 942 aa23.12■■□□□ 1.29
CHMP3-203ENST00000409225 RRAGCQ9HB90 399 aa23.12■■□□□ 1.29
CHMP3-203ENST00000409225 SRP68Q9UHB9 627 aaKnown RBP23.11■■□□□ 1.29
CHMP3-203ENST00000409225 HSP90AB1P08238 724 aaKnown RBP23.09■■□□□ 1.29
CHMP3-203ENST00000409225 TNNT2P45379 298 aaPredicted RBP23.09■■□□□ 1.29
CHMP3-203ENST00000409225 MYH14Q7Z406 1995 aaKnown RBP23.09■■□□□ 1.29
CHMP3-203ENST00000409225 PTCD1O75127 700 aaKnown RBP23.08■■□□□ 1.29
CHMP3-203ENST00000409225 CABP4P57796 275 aa23.08■■□□□ 1.29
CHMP3-203ENST00000409225 FKBP8Q14318 412 aa23.08■■□□□ 1.29
CHMP3-203ENST00000409225 CHRNA5P30532 468 aa23.07■■□□□ 1.28
CHMP3-203ENST00000409225 DDR1Q08345 913 aa23.07■■□□□ 1.28
CHMP3-203ENST00000409225 KDM6AO15550 1401 aaPredicted RBP23.07■■□□□ 1.28
CHMP3-203ENST00000409225 CRKLP46109 303 aaKnown RBP23.06■■□□□ 1.28
CHMP3-203ENST00000409225 PLEKHO1Q53GL0 409 aaPredicted RBP23.06■■□□□ 1.28
CHMP3-203ENST00000409225 ZNF530Q6P9A1 599 aaPredicted RBP23.06■■□□□ 1.28
CHMP3-203ENST00000409225 TNS4Q8IZW8 715 aa23.06■■□□□ 1.28
CHMP3-203ENST00000409225 TNRC6CQ9HCJ0 1690 aaKnown RBP23.05■■□□□ 1.28
CHMP3-203ENST00000409225 USP42Q9H9J4 1324 aaKnown RBP23.05■■□□□ 1.28
CHMP3-203ENST00000409225 SMC1BQ8NDV3 1235 aa23.04■■□□□ 1.28
CHMP3-203ENST00000409225 RASSF7Q02833 373 aa23.02■■□□□ 1.28
CHMP3-203ENST00000409225 SBF1O95248 1867 aa23.01■■□□□ 1.27
CHMP3-203ENST00000409225 POLRMTO00411 1230 aaKnown RBP23.01■■□□□ 1.27
CHMP3-203ENST00000409225 MTHFSP49914 203 aa23.01■■□□□ 1.27
CHMP3-203ENST00000409225 AMOTQ4VCS5 1084 aa23■■□□□ 1.27
CHMP3-203ENST00000409225 PRELPP51888 382 aa22.99■■□□□ 1.27
CHMP3-203ENST00000409225 C1orf141Q5JVX7 400 aa22.99■■□□□ 1.27
CHMP3-203ENST00000409225 NFATC2IPQ8NCF5 419 aa22.99■■□□□ 1.27
CHMP3-203ENST00000409225 POLR3GLQ9BT43 218 aa22.99■■□□□ 1.27
CHMP3-203ENST00000409225 TJP1Q07157 1748 aa22.99■■□□□ 1.27
CHMP3-203ENST00000409225 TM4SF1P30408 202 aa22.98■■□□□ 1.27
CHMP3-203ENST00000409225 INTS5Q6P9B9 1019 aaKnown RBP22.97■■□□□ 1.27
CHMP3-203ENST00000409225 ZPR1O75312 459 aa22.96■■□□□ 1.27
CHMP3-203ENST00000409225 USPL1Q5W0Q7 1092 aa22.96■■□□□ 1.27
CHMP3-203ENST00000409225 AEBP1Q8IUX7 1158 aa22.96■■□□□ 1.27
CHMP3-203ENST00000409225 PCNTO95613 3336 aa22.95■■□□□ 1.26
CHMP3-203ENST00000409225 HSPA1AP0DMV8 641 aaKnown RBP22.95■■□□□ 1.26
CHMP3-203ENST00000409225 HSPA1BP0DMV9 641 aaKnown RBP22.95■■□□□ 1.26
CHMP3-203ENST00000409225 ZC3H4Q9UPT8 1303 aaKnown RBP22.95■■□□□ 1.26
CHMP3-203ENST00000409225 ADAMTS7Q9UKP4 1686 aa22.94■■□□□ 1.26
CHMP3-203ENST00000409225 VEGFAP15692 232 aaPredicted RBP22.94■■□□□ 1.26
CHMP3-203ENST00000409225 LMNB1P20700 586 aa22.94■■□□□ 1.26
CHMP3-203ENST00000409225 GLTPD2A6NH11 291 aa22.93■■□□□ 1.26
CHMP3-203ENST00000409225 DNAJC10Q8IXB1 793 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms