RNA–Protein interactions for RNA: ENST00000408454.1

SNORD88B-201, Transcript of small nucleolar RNA, C/D box 88B, humanhuman

BASIC

Gene SNORD88B, Length 91 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNORD88B-201ENST00000408454 ITGB4P16144 1822 aa17.3■□□□□ 0.36
SNORD88B-201ENST00000408454 ZNF831Q5JPB2 1677 aa17.29■□□□□ 0.36
SNORD88B-201ENST00000408454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.29■□□□□ 0.36
SNORD88B-201ENST00000408454 GNPATO15228 680 aa17.29■□□□□ 0.36
SNORD88B-201ENST00000408454 COL24A1Q17RW2 1714 aa17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 TOGARAM1Q9Y4F4 1720 aa17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 IL13P35225 146 aa17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 KCNQ4P56696 695 aa17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 NLGN1Q8N2Q7 840 aa17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 RBM42Q9BTD8 480 aaKnown RBP17.28■□□□□ 0.36
SNORD88B-201ENST00000408454 NEFMP07197 916 aa17.27■□□□□ 0.36
SNORD88B-201ENST00000408454 TRAPPC3LQ5T215 181 aa17.27■□□□□ 0.36
SNORD88B-201ENST00000408454 ASAP1Q9ULH1 1129 aa17.27■□□□□ 0.36
SNORD88B-201ENST00000408454 CNTNAP4Q9C0A0 1308 aa17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 PHF14O94880 888 aa17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 CC2D1BQ5T0F9 858 aaKnown RBP17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 GAS2L2Q8NHY3 880 aa17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 ATG3Q9NT62 314 aa17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 TAF1LQ8IZX4 1826 aa17.26■□□□□ 0.35
SNORD88B-201ENST00000408454 PER1O15534 1290 aaPredicted RBP17.25■□□□□ 0.35
SNORD88B-201ENST00000408454 RFC4P35249 363 aa17.25■□□□□ 0.35
SNORD88B-201ENST00000408454 PELP1Q8IZL8 1130 aaKnown RBP17.25■□□□□ 0.35
SNORD88B-201ENST00000408454 NPM2Q86SE8 214 aaKnown RBP17.23■□□□□ 0.35
SNORD88B-201ENST00000408454 TUBGCP6Q96RT7 1819 aa17.23■□□□□ 0.35
SNORD88B-201ENST00000408454 TTC5Q8N0Z6 440 aa17.22■□□□□ 0.35
SNORD88B-201ENST00000408454 LINC00116Q8NCU8 138 aa17.22■□□□□ 0.35
SNORD88B-201ENST00000408454 U2SURPO15042 1029 aaKnown RBP17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 RPS6KA4O75676 772 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 TEFQ10587 303 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 MSL1Q68DK7 614 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 AEBP1Q8IUX7 1158 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 NFATC2IPQ8NCF5 419 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 TEX13AQ9BXU3 409 aaPredicted RBP17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 SLC52A2Q9HAB3 445 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 CCDC87Q9NVE4 849 aa17.21■□□□□ 0.35
SNORD88B-201ENST00000408454 KDM6AO15550 1401 aaPredicted RBP17.21■□□□□ 0.34
SNORD88B-201ENST00000408454 VSIG10Q8N0Z9 540 aa17.2■□□□□ 0.34
SNORD88B-201ENST00000408454 PNNQ9H307 717 aaKnown RBP17.2■□□□□ 0.34
SNORD88B-201ENST00000408454 PTCD1O75127 700 aaKnown RBP17.19■□□□□ 0.34
SNORD88B-201ENST00000408454 PARP3Q9Y6F1 533 aa17.19■□□□□ 0.34
SNORD88B-201ENST00000408454 UBR3Q6ZT12 1888 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 CHD4Q14839 1912 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 STARD3NLO95772 234 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 HMOX1P09601 288 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 TGFB2P61812 414 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 ITPK1Q13572 414 aa17.18■□□□□ 0.34
SNORD88B-201ENST00000408454 GNAT3A8MTJ3 354 aa17.17■□□□□ 0.34
SNORD88B-201ENST00000408454 ZPR1O75312 459 aa17.17■□□□□ 0.34
SNORD88B-201ENST00000408454 RTF1Q92541 710 aaKnown RBP17.17■□□□□ 0.34
SNORD88B-201ENST00000408454 RNMTO43148 476 aaKnown RBP17.16■□□□□ 0.34
SNORD88B-201ENST00000408454 CICQ96RK0 1608 aaPredicted RBP17.16■□□□□ 0.34
SNORD88B-201ENST00000408454 MRC1P22897 1456 aa17.16■□□□□ 0.34
SNORD88B-201ENST00000408454 A0A087WZG4 1122 aa17.15■□□□□ 0.34
SNORD88B-201ENST00000408454 MMP10P09238 476 aa17.15■□□□□ 0.34
SNORD88B-201ENST00000408454 SCN11AQ9UI33 1791 aa17.15■□□□□ 0.34
SNORD88B-201ENST00000408454 CRKLP46109 303 aaKnown RBP17.14■□□□□ 0.33
SNORD88B-201ENST00000408454 ZNF784Q8NCA9 323 aaPredicted RBP17.14■□□□□ 0.33
SNORD88B-201ENST00000408454 MTHFSDQ2M296 383 aaKnown RBP17.13■□□□□ 0.33
SNORD88B-201ENST00000408454 NLGN2Q8NFZ4 835 aa17.13■□□□□ 0.33
SNORD88B-201ENST00000408454 ARHGEF1Q92888 912 aaKnown RBP17.13■□□□□ 0.33
SNORD88B-201ENST00000408454 FCHSD2O94868 740 aa17.12■□□□□ 0.33
SNORD88B-201ENST00000408454 COL5A3P25940 1745 aaPredicted RBP17.12■□□□□ 0.33
SNORD88B-201ENST00000408454 HTATSF1O43719 755 aaKnown RBP17.11■□□□□ 0.33
SNORD88B-201ENST00000408454 GIGYF1O75420 1035 aaPredicted RBP17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 U2AF1L5P0DN76 240 aaPredicted RBP17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 U2AF1Q01081 240 aaKnown RBP eCLIP17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 FMNL2Q96PY5 1086 aa17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 PDZRN3Q9UPQ7 1066 aa17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 USP42Q9H9J4 1324 aaKnown RBP17.1■□□□□ 0.33
SNORD88B-201ENST00000408454 GYS1P13807 737 aa17.09■□□□□ 0.33
SNORD88B-201ENST00000408454 CNGB1Q14028 1251 aaPredicted RBP17.09■□□□□ 0.33
SNORD88B-201ENST00000408454 COL3A1P02461 1466 aaPredicted RBP17.08■□□□□ 0.32
SNORD88B-201ENST00000408454 PPP2R1AP30153 589 aa17.07■□□□□ 0.32
SNORD88B-201ENST00000408454 PRKAR2BP31323 418 aa17.07■□□□□ 0.32
SNORD88B-201ENST00000408454 ZNF790Q6PG37 636 aa17.07■□□□□ 0.32
SNORD88B-201ENST00000408454 SLC4A9Q96Q91 983 aa17.07■□□□□ 0.32
SNORD88B-201ENST00000408454 ADAMTS7Q9UKP4 1686 aa17.07■□□□□ 0.32
SNORD88B-201ENST00000408454 C10orf71Q711Q0 1435 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 COL15A1P39059 1388 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 DNAJC10Q8IXB1 793 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 PNISRQ8TF01 805 aaKnown RBP17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 LGR6Q9HBX8 967 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 NARFQ9UHQ1 456 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 C4AP0C0L4 1744 aa17.06■□□□□ 0.32
SNORD88B-201ENST00000408454 SOS1Q07889 1333 aaPredicted RBP17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 MAPK8IP3Q9UPT6 1336 aa17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 CYP19A1P11511 503 aaPredicted RBP17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 YBX3P16989 372 aaKnown RBP eCLIP17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 GPBP1L1Q9HC44 474 aaPredicted RBP17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 PIM2Q9P1W9 311 aa17.05■□□□□ 0.32
SNORD88B-201ENST00000408454 HEG1Q9ULI3 1381 aa17.04■□□□□ 0.32
SNORD88B-201ENST00000408454 BTBD11A6QL63 1104 aa17.04■□□□□ 0.32
SNORD88B-201ENST00000408454 RALBP1Q15311 655 aa17.04■□□□□ 0.32
SNORD88B-201ENST00000408454 RSPH6AQ9H0K4 717 aa17.04■□□□□ 0.32
SNORD88B-201ENST00000408454 ZNF652Q9Y2D9 606 aa17.04■□□□□ 0.32
SNORD88B-201ENST00000408454 CEMIPQ8WUJ3 1361 aa17.03■□□□□ 0.32
SNORD88B-201ENST00000408454 NPHP1O15259 732 aa17.03■□□□□ 0.32
SNORD88B-201ENST00000408454 IL6STP40189 918 aaPredicted RBP17.03■□□□□ 0.32
SNORD88B-201ENST00000408454 INTS5Q6P9B9 1019 aaKnown RBP17.03■□□□□ 0.32
SNORD88B-201ENST00000408454 AMIGO3Q86WK7 504 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms