RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 BTBD11A6QL63 1104 aa32.63■■■□□ 2.81
CPNE1-205ENST00000401607 EIF4A1P60842 406 aaKnown RBP32.63■■■□□ 2.81
CPNE1-205ENST00000401607 IFNL2Q8IZJ0 200 aa32.63■■■□□ 2.81
CPNE1-205ENST00000401607 CYP27B1O15528 508 aa32.62■■■□□ 2.81
CPNE1-205ENST00000401607 IGHDP01880 384 aa32.62■■■□□ 2.81
CPNE1-205ENST00000401607 KCNQ3O43525 872 aa32.61■■■□□ 2.81
CPNE1-205ENST00000401607 EVA1CP58658 441 aa32.6■■■□□ 2.81
CPNE1-205ENST00000401607 SLC4A2P04920 1241 aa32.6■■■□□ 2.81
CPNE1-205ENST00000401607 PIP4K2BP78356 416 aa32.59■■■□□ 2.81
CPNE1-205ENST00000401607 PTPRCP08575 1304 aa32.58■■■□□ 2.81
CPNE1-205ENST00000401607 BTG4Q9NY30 223 aa32.58■■■□□ 2.81
CPNE1-205ENST00000401607 CCDC30Q5VVM6 783 aa32.58■■■□□ 2.81
CPNE1-205ENST00000401607 ZBTB40Q9NUA8 1239 aa32.58■■■□□ 2.81
CPNE1-205ENST00000401607 MRC1P22897 1456 aa32.57■■■□□ 2.8
CPNE1-205ENST00000401607 IL2RBP14784 551 aa32.55■■■□□ 2.8
CPNE1-205ENST00000401607 G2E3Q7L622 706 aa32.55■■■□□ 2.8
CPNE1-205ENST00000401607 STK31Q9BXU1 1019 aa32.55■■■□□ 2.8
CPNE1-205ENST00000401607 SLC52A2Q9HAB3 445 aa32.55■■■□□ 2.8
CPNE1-205ENST00000401607 HOXB7P09629 217 aa32.54■■■□□ 2.8
CPNE1-205ENST00000401607 DCAF5Q96JK2 942 aa32.54■■■□□ 2.8
CPNE1-205ENST00000401607 SHANK3Q9BYB0 1731 aa32.54■■■□□ 2.8
CPNE1-205ENST00000401607 ZBTB7BO15156 539 aaPredicted RBP32.53■■■□□ 2.8
CPNE1-205ENST00000401607 SKAP1Q86WV1 359 aa32.53■■■□□ 2.8
CPNE1-205ENST00000401607 ZCRB1Q8TBF4 217 aaKnown RBP32.53■■■□□ 2.8
CPNE1-205ENST00000401607 HSP90AB1P08238 724 aaKnown RBP32.52■■■□□ 2.8
CPNE1-205ENST00000401607 NECTIN2Q92692 538 aa32.52■■■□□ 2.8
CPNE1-205ENST00000401607 HEG1Q9ULI3 1381 aa32.52■■■□□ 2.8
CPNE1-205ENST00000401607 PCDH11XQ9BZA7 1347 aa32.51■■■□□ 2.8
CPNE1-205ENST00000401607 PCDH11YQ9BZA8 1340 aa32.51■■■□□ 2.8
CPNE1-205ENST00000401607 UBAP1LF5GYI3 381 aa32.51■■■□□ 2.79
CPNE1-205ENST00000401607 HDGFL1Q5TGJ6 251 aa32.51■■■□□ 2.79
CPNE1-205ENST00000401607 CACNA1FO60840 1977 aa32.5■■■□□ 2.79
CPNE1-205ENST00000401607 INTS3Q68E01 1043 aaKnown RBP32.5■■■□□ 2.79
CPNE1-205ENST00000401607 PLCH1Q4KWH8 1693 aa32.48■■■□□ 2.79
CPNE1-205ENST00000401607 NFATC2IPQ8NCF5 419 aa32.47■■■□□ 2.79
CPNE1-205ENST00000401607 CHMP4BQ9H444 224 aaKnown RBP32.47■■■□□ 2.79
CPNE1-205ENST00000401607 RWDD1Q9H446 243 aaPredicted RBP32.46■■■□□ 2.79
CPNE1-205ENST00000401607 FLIIQ13045 1269 aa32.45■■■□□ 2.79
CPNE1-205ENST00000401607 USP35Q9P2H5 1018 aa32.45■■■□□ 2.79
CPNE1-205ENST00000401607 GIGYF1O75420 1035 aaPredicted RBP32.45■■■□□ 2.78
CPNE1-205ENST00000401607 EIF2S2P20042 333 aaKnown RBP32.44■■■□□ 2.78
CPNE1-205ENST00000401607 ZNF790Q6PG37 636 aa32.44■■■□□ 2.78
CPNE1-205ENST00000401607 HDAC1Q13547 482 aaPredicted RBP32.43■■■□□ 2.78
CPNE1-205ENST00000401607 AEBP2Q6ZN18 517 aaPredicted RBP32.43■■■□□ 2.78
CPNE1-205ENST00000401607 DISP2A7MBM2 1401 aa32.43■■■□□ 2.78
CPNE1-205ENST00000401607 NRAPQ86VF7 1730 aa32.43■■■□□ 2.78
CPNE1-205ENST00000401607 ADAMTS2O95450 1211 aa32.42■■■□□ 2.78
CPNE1-205ENST00000401607 SLC39A6Q13433 755 aa32.42■■■□□ 2.78
CPNE1-205ENST00000401607 NKX1-1Q15270 411 aaPredicted RBP32.42■■■□□ 2.78
CPNE1-205ENST00000401607 CHMP4AQ9BY43 222 aa32.41■■■□□ 2.78
CPNE1-205ENST00000401607 F6X3S4 739 aa32.4■■■□□ 2.78
CPNE1-205ENST00000401607 CHPF2Q9P2E5 772 aa32.4■■■□□ 2.78
CPNE1-205ENST00000401607 PRAMEF22A3QJZ6 481 aa32.39■■■□□ 2.78
CPNE1-205ENST00000401607 CABP4P57796 275 aa32.39■■■□□ 2.78
CPNE1-205ENST00000401607 FKBP5Q13451 457 aaPredicted RBP32.38■■■□□ 2.77
CPNE1-205ENST00000401607 C5P01031 1676 aa32.38■■■□□ 2.77
CPNE1-205ENST00000401607 DDX54Q8TDD1 881 aaKnown RBP32.37■■■□□ 2.77
CPNE1-205ENST00000401607 C1orf115Q9H7X2 142 aa32.37■■■□□ 2.77
CPNE1-205ENST00000401607 PHAXQ9H814 394 aaKnown RBP32.37■■■□□ 2.77
CPNE1-205ENST00000401607 WNK3Q9BYP7 1800 aa32.37■■■□□ 2.77
CPNE1-205ENST00000401607 NUTM2BA6NNL0 878 aaPredicted RBP32.37■■■□□ 2.77
CPNE1-205ENST00000401607 NUTM2EB1AL46 878 aaPredicted RBP32.37■■■□□ 2.77
CPNE1-205ENST00000401607 NUTM2AQ8IVF1 878 aaPredicted RBP32.37■■■□□ 2.77
CPNE1-205ENST00000401607 N4BP2Q86UW6 1770 aaPredicted RBP32.36■■■□□ 2.77
CPNE1-205ENST00000401607 ERVV-2B6SEH9 535 aa32.35■■■□□ 2.77
CPNE1-205ENST00000401607 CCT4P50991 539 aaKnown RBP32.35■■■□□ 2.77
CPNE1-205ENST00000401607 TOGARAM1Q9Y4F4 1720 aa32.34■■■□□ 2.77
CPNE1-205ENST00000401607 SLC4A10Q6U841 1118 aa32.34■■■□□ 2.77
CPNE1-205ENST00000401607 ZNF496Q96IT1 587 aaPredicted RBP32.34■■■□□ 2.77
CPNE1-205ENST00000401607 RBM19Q9Y4C8 960 aaKnown RBP32.34■■■□□ 2.77
CPNE1-205ENST00000401607 PXDNLA1KZ92 1463 aa32.34■■■□□ 2.77
CPNE1-205ENST00000401607 GLI3P10071 1580 aa32.34■■■□□ 2.77
CPNE1-205ENST00000401607 DBF4Q9UBU7 674 aaPredicted RBP32.32■■■□□ 2.77
CPNE1-205ENST00000401607 NWD2Q9ULI1 1742 aa32.32■■■□□ 2.76
CPNE1-205ENST00000401607 CERKQ8TCT0 537 aa32.32■■■□□ 2.76
CPNE1-205ENST00000401607 PAPPAQ13219 1627 aa32.31■■■□□ 2.76
CPNE1-205ENST00000401607 SLIT2O94813 1529 aa32.31■■■□□ 2.76
CPNE1-205ENST00000401607 ANXA1P04083 346 aa32.31■■■□□ 2.76
CPNE1-205ENST00000401607 TTC5Q8N0Z6 440 aa32.31■■■□□ 2.76
CPNE1-205ENST00000401607 MEIS3Q99687 375 aa32.3■■■□□ 2.76
CPNE1-205ENST00000401607 PDZRN3Q9UPQ7 1066 aa32.3■■■□□ 2.76
CPNE1-205ENST00000401607 RGS3P49796 1198 aa32.3■■■□□ 2.76
CPNE1-205ENST00000401607 SMC5Q8IY18 1101 aa32.3■■■□□ 2.76
CPNE1-205ENST00000401607 JCADQ9P266 1359 aa32.29■■■□□ 2.76
CPNE1-205ENST00000401607 SIRT2Q8IXJ6 389 aa32.29■■■□□ 2.76
CPNE1-205ENST00000401607 PROSER3Q2NL68 480 aa32.28■■■□□ 2.76
CPNE1-205ENST00000401607 UBR2Q8IWV8 1755 aa32.28■■■□□ 2.76
CPNE1-205ENST00000401607 ATP10DQ9P241 1426 aa32.28■■■□□ 2.76
CPNE1-205ENST00000401607 FMNL2Q96PY5 1086 aa32.27■■■□□ 2.76
CPNE1-205ENST00000401607 SPATA31A1Q5TZJ5 1347 aa32.27■■■□□ 2.76
CPNE1-205ENST00000401607 SNRPA1P09661 255 aaKnown RBP32.24■■■□□ 2.75
CPNE1-205ENST00000401607 PDIA6Q15084 440 aa32.24■■■□□ 2.75
CPNE1-205ENST00000401607 DDX21Q9NR30 783 aaKnown RBP eCLIP32.24■■■□□ 2.75
CPNE1-205ENST00000401607 LAMB4A4D0S4 1761 aa32.23■■■□□ 2.75
CPNE1-205ENST00000401607 KCPQ6ZWJ8 1503 aa32.23■■■□□ 2.75
CPNE1-205ENST00000401607 TNS2Q63HR2 1409 aa32.23■■■□□ 2.75
CPNE1-205ENST00000401607 ADCY9O60503 1353 aa32.22■■■□□ 2.75
CPNE1-205ENST00000401607 HYPKQ9NX55 129 aa32.22■■■□□ 2.75
CPNE1-205ENST00000401607 THRAP3Q9Y2W1 955 aaKnown RBP32.22■■■□□ 2.75
CPNE1-205ENST00000401607 LRP6O75581 1613 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms