RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 ATP6V1AP38606 617 aa25.32■■□□□ 1.64
UFD1-202ENST00000399523 JMYQ8N9B5 988 aa25.32■■□□□ 1.64
UFD1-202ENST00000399523 SPG7Q9UQ90 795 aa25.32■■□□□ 1.64
UFD1-202ENST00000399523 C10orf71Q711Q0 1435 aa25.31■■□□□ 1.64
UFD1-202ENST00000399523 NLGN1Q8N2Q7 840 aa25.31■■□□□ 1.64
UFD1-202ENST00000399523 KLRG1Q96E93 195 aa25.31■■□□□ 1.64
UFD1-202ENST00000399523 TMOD3Q9NYL9 352 aa25.31■■□□□ 1.64
UFD1-202ENST00000399523 COL13A1Q5TAT6 717 aaPredicted RBP25.3■■□□□ 1.64
UFD1-202ENST00000399523 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.3■■□□□ 1.64
UFD1-202ENST00000399523 BRCA1P38398 1863 aaKnown RBP25.29■■□□□ 1.64
UFD1-202ENST00000399523 DPEP1P16444 411 aa25.28■■□□□ 1.64
UFD1-202ENST00000399523 TMF1P82094 1093 aa25.28■■□□□ 1.64
UFD1-202ENST00000399523 FSTL1Q12841 308 aa25.27■■□□□ 1.64
UFD1-202ENST00000399523 TRAPPC3LQ5T215 181 aa25.27■■□□□ 1.64
UFD1-202ENST00000399523 ATG3Q9NT62 314 aa25.27■■□□□ 1.64
UFD1-202ENST00000399523 KIF20BQ96Q89 1820 aa25.26■■□□□ 1.63
UFD1-202ENST00000399523 FCHSD2O94868 740 aa25.26■■□□□ 1.63
UFD1-202ENST00000399523 HTRA3P83110 453 aa25.26■■□□□ 1.63
UFD1-202ENST00000399523 RTCBQ9Y3I0 505 aaKnown RBP25.26■■□□□ 1.63
UFD1-202ENST00000399523 TONSLQ96HA7 1378 aa25.26■■□□□ 1.63
UFD1-202ENST00000399523 C9orf131Q5VYM1 1079 aa25.25■■□□□ 1.63
UFD1-202ENST00000399523 C16orf71Q8IYS4 520 aaPredicted RBP25.25■■□□□ 1.63
UFD1-202ENST00000399523 CCDC87Q9NVE4 849 aa25.25■■□□□ 1.63
UFD1-202ENST00000399523 EMILIN1Q9Y6C2 1016 aa25.25■■□□□ 1.63
UFD1-202ENST00000399523 PLEKHG2Q9H7P9 1386 aa25.25■■□□□ 1.63
UFD1-202ENST00000399523 ARFGEF1Q9Y6D6 1849 aa25.24■■□□□ 1.63
UFD1-202ENST00000399523 ADRA2BP18089 450 aa25.24■■□□□ 1.63
UFD1-202ENST00000399523 KCNA3P22001 575 aa25.24■■□□□ 1.63
UFD1-202ENST00000399523 C4AP0C0L4 1744 aa25.23■■□□□ 1.63
UFD1-202ENST00000399523 KDRP35968 1356 aa25.23■■□□□ 1.63
UFD1-202ENST00000399523 PHKG2P15735 406 aa25.23■■□□□ 1.63
UFD1-202ENST00000399523 IFNL2Q8IZJ0 200 aa25.23■■□□□ 1.63
UFD1-202ENST00000399523 ARHGEF1Q92888 912 aaKnown RBP25.23■■□□□ 1.63
UFD1-202ENST00000399523 GYS1P13807 737 aa25.22■■□□□ 1.63
UFD1-202ENST00000399523 RC3H1Q5TC82 1133 aaKnown RBP25.22■■□□□ 1.63
UFD1-202ENST00000399523 ZNF831Q5JPB2 1677 aa25.22■■□□□ 1.63
UFD1-202ENST00000399523 SLC4A9Q96Q91 983 aa25.21■■□□□ 1.63
UFD1-202ENST00000399523 EYA1Q99502 592 aa25.21■■□□□ 1.63
UFD1-202ENST00000399523 WASHC2AQ641Q2 1341 aa25.2■■□□□ 1.62
UFD1-202ENST00000399523 KDM2BQ8NHM5 1336 aa25.2■■□□□ 1.62
UFD1-202ENST00000399523 PARP3Q9Y6F1 533 aa25.2■■□□□ 1.62
UFD1-202ENST00000399523 DCAF5Q96JK2 942 aa25.19■■□□□ 1.62
UFD1-202ENST00000399523 CNTNAP4Q9C0A0 1308 aa25.18■■□□□ 1.62
UFD1-202ENST00000399523 KCPQ6ZWJ8 1503 aa25.18■■□□□ 1.62
UFD1-202ENST00000399523 ANKRD26Q9UPS8 1709 aa25.18■■□□□ 1.62
UFD1-202ENST00000399523 PIM2Q9P1W9 311 aa25.18■■□□□ 1.62
UFD1-202ENST00000399523 PPM1GO15355 546 aaPredicted RBP25.17■■□□□ 1.62
UFD1-202ENST00000399523 RPS6KA4O75676 772 aa25.17■■□□□ 1.62
UFD1-202ENST00000399523 RFC4P35249 363 aa25.17■■□□□ 1.62
UFD1-202ENST00000399523 TNS4Q8IZW8 715 aa25.17■■□□□ 1.62
UFD1-202ENST00000399523 CARD14Q9BXL6 1004 aa25.17■■□□□ 1.62
UFD1-202ENST00000399523 CAPN15O75808 1086 aa25.16■■□□□ 1.62
UFD1-202ENST00000399523 COL5A3P25940 1745 aaPredicted RBP25.16■■□□□ 1.62
UFD1-202ENST00000399523 PRELPP51888 382 aa25.16■■□□□ 1.62
UFD1-202ENST00000399523 MYH14Q7Z406 1995 aaKnown RBP25.16■■□□□ 1.62
UFD1-202ENST00000399523 RRAGCQ9HB90 399 aa25.15■■□□□ 1.62
UFD1-202ENST00000399523 ERVV-2B6SEH9 535 aa25.14■■□□□ 1.62
UFD1-202ENST00000399523 DALRD3Q5D0E6 543 aaKnown RBP25.14■■□□□ 1.62
UFD1-202ENST00000399523 RBM42Q9BTD8 480 aaKnown RBP25.14■■□□□ 1.62
UFD1-202ENST00000399523 RNF181Q9P0P0 153 aa25.14■■□□□ 1.62
UFD1-202ENST00000399523 SBF1O95248 1867 aa25.14■■□□□ 1.61
UFD1-202ENST00000399523 TNRC6CQ9HCJ0 1690 aaKnown RBP25.13■■□□□ 1.61
UFD1-202ENST00000399523 SMC1BQ8NDV3 1235 aa25.12■■□□□ 1.61
UFD1-202ENST00000399523 CDCA8Q53HL2 280 aa25.11■■□□□ 1.61
UFD1-202ENST00000399523 POLKQ9UBT6 870 aa25.08■■□□□ 1.61
UFD1-202ENST00000399523 HSP90AB1P08238 724 aaKnown RBP25.07■■□□□ 1.6
UFD1-202ENST00000399523 DDR1Q08345 913 aa25.07■■□□□ 1.6
UFD1-202ENST00000399523 FKBP8Q14318 412 aa25.07■■□□□ 1.6
UFD1-202ENST00000399523 ZC3H4Q9UPT8 1303 aaKnown RBP25.07■■□□□ 1.6
UFD1-202ENST00000399523 CHRNA5P30532 468 aa25.05■■□□□ 1.6
UFD1-202ENST00000399523 EIF4A2Q14240 407 aaKnown RBP25.05■■□□□ 1.6
UFD1-202ENST00000399523 SRP68Q9UHB9 627 aaKnown RBP25.05■■□□□ 1.6
UFD1-202ENST00000399523 USP42Q9H9J4 1324 aaKnown RBP25.05■■□□□ 1.6
UFD1-202ENST00000399523 CRKLP46109 303 aaKnown RBP25.03■■□□□ 1.6
UFD1-202ENST00000399523 KDM6AO15550 1401 aaPredicted RBP25.03■■□□□ 1.6
UFD1-202ENST00000399523 HSPA1AP0DMV8 641 aaKnown RBP25.02■■□□□ 1.6
UFD1-202ENST00000399523 HSPA1BP0DMV9 641 aaKnown RBP25.02■■□□□ 1.6
UFD1-202ENST00000399523 CABP4P57796 275 aa25.02■■□□□ 1.6
UFD1-202ENST00000399523 POLRMTO00411 1230 aaKnown RBP25.01■■□□□ 1.59
UFD1-202ENST00000399523 VEGFAP15692 232 aaPredicted RBP25.01■■□□□ 1.59
UFD1-202ENST00000399523 TM4SF1P30408 202 aa25.01■■□□□ 1.59
UFD1-202ENST00000399523 GLTPD2A6NH11 291 aa24.99■■□□□ 1.59
UFD1-202ENST00000399523 PTCD1O75127 700 aaKnown RBP24.99■■□□□ 1.59
UFD1-202ENST00000399523 PLEKHO1Q53GL0 409 aaPredicted RBP24.99■■□□□ 1.59
UFD1-202ENST00000399523 LMNB1P20700 586 aa24.98■■□□□ 1.59
UFD1-202ENST00000399523 RASSF7Q02833 373 aa24.98■■□□□ 1.59
UFD1-202ENST00000399523 ADAMTS7Q9UKP4 1686 aa24.97■■□□□ 1.59
UFD1-202ENST00000399523 AMOTQ4VCS5 1084 aa24.96■■□□□ 1.59
UFD1-202ENST00000399523 ZNF530Q6P9A1 599 aaPredicted RBP24.96■■□□□ 1.59
UFD1-202ENST00000399523 INTS5Q6P9B9 1019 aaKnown RBP24.96■■□□□ 1.59
UFD1-202ENST00000399523 MTHFSP49914 203 aa24.95■■□□□ 1.58
UFD1-202ENST00000399523 TJP1Q07157 1748 aa24.95■■□□□ 1.58
UFD1-202ENST00000399523 NFATC2IPQ8NCF5 419 aa24.94■■□□□ 1.58
UFD1-202ENST00000399523 ZPR1O75312 459 aa24.92■■□□□ 1.58
UFD1-202ENST00000399523 CCDC88AQ3V6T2 1871 aa24.92■■□□□ 1.58
UFD1-202ENST00000399523 AFDNP55196 1824 aaKnown RBP24.91■■□□□ 1.58
UFD1-202ENST00000399523 USPL1Q5W0Q7 1092 aa24.91■■□□□ 1.58
UFD1-202ENST00000399523 POTECB2RU33 542 aa24.9■■□□□ 1.58
UFD1-202ENST00000399523 TNNT2P45379 298 aaPredicted RBP24.9■■□□□ 1.58
UFD1-202ENST00000399523 DLEC1Q9Y238 1755 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms