RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 KDRP35968 1356 aa22.42■■□□□ 1.18
CUX2-202ENST00000397643 KIF3CO14782 793 aa22.42■■□□□ 1.18
CUX2-202ENST00000397643 PPM1GO15355 546 aaPredicted RBP22.41■■□□□ 1.18
CUX2-202ENST00000397643 PHKG2P15735 406 aa22.41■■□□□ 1.18
CUX2-202ENST00000397643 ATP6V1AP38606 617 aa22.4■■□□□ 1.18
CUX2-202ENST00000397643 ATG3Q9NT62 314 aa22.4■■□□□ 1.18
CUX2-202ENST00000397643 MMP10P09238 476 aa22.39■■□□□ 1.17
CUX2-202ENST00000397643 ZNF831Q5JPB2 1677 aa22.39■■□□□ 1.17
CUX2-202ENST00000397643 IFNL2Q8IZJ0 200 aa22.38■■□□□ 1.17
CUX2-202ENST00000397643 POLKQ9UBT6 870 aa22.38■■□□□ 1.17
CUX2-202ENST00000397643 C10orf71Q711Q0 1435 aa22.38■■□□□ 1.17
CUX2-202ENST00000397643 N4BP2Q86UW6 1770 aaPredicted RBP22.38■■□□□ 1.17
CUX2-202ENST00000397643 SLC4A9Q96Q91 983 aa22.37■■□□□ 1.17
CUX2-202ENST00000397643 COL5A3P25940 1745 aaPredicted RBP22.37■■□□□ 1.17
CUX2-202ENST00000397643 PLEKHG2Q9H7P9 1386 aa22.37■■□□□ 1.17
CUX2-202ENST00000397643 EIF4A2Q14240 407 aaKnown RBP22.34■■□□□ 1.17
CUX2-202ENST00000397643 BRCA1P38398 1863 aaKnown RBP22.34■■□□□ 1.17
CUX2-202ENST00000397643 C4AP0C0L4 1744 aa22.34■■□□□ 1.17
CUX2-202ENST00000397643 TGFB2P61812 414 aa22.33■■□□□ 1.17
CUX2-202ENST00000397643 RTCBQ9Y3I0 505 aaKnown RBP22.32■■□□□ 1.16
CUX2-202ENST00000397643 TRAPPC3LQ5T215 181 aa22.31■■□□□ 1.16
CUX2-202ENST00000397643 KDM6AO15550 1401 aaPredicted RBP22.31■■□□□ 1.16
CUX2-202ENST00000397643 CNTNAP4Q9C0A0 1308 aa22.31■■□□□ 1.16
CUX2-202ENST00000397643 MYH14Q7Z406 1995 aaKnown RBP22.3■■□□□ 1.16
CUX2-202ENST00000397643 A0A0G2JLW4 131 aa22.3■■□□□ 1.16
CUX2-202ENST00000397643 NLGN1Q8N2Q7 840 aa22.3■■□□□ 1.16
CUX2-202ENST00000397643 ARHGEF1Q92888 912 aaKnown RBP22.3■■□□□ 1.16
CUX2-202ENST00000397643 BCS1LQ9Y276 419 aa22.3■■□□□ 1.16
CUX2-202ENST00000397643 ERVV-2B6SEH9 535 aa22.29■■□□□ 1.16
CUX2-202ENST00000397643 GYS1P13807 737 aa22.29■■□□□ 1.16
CUX2-202ENST00000397643 ADRA2BP18089 450 aa22.29■■□□□ 1.16
CUX2-202ENST00000397643 RC3H1Q5TC82 1133 aaKnown RBP22.29■■□□□ 1.16
CUX2-202ENST00000397643 DPEP1P16444 411 aa22.27■■□□□ 1.16
CUX2-202ENST00000397643 RBM42Q9BTD8 480 aaKnown RBP22.27■■□□□ 1.16
CUX2-202ENST00000397643 RPS6KA4O75676 772 aa22.26■■□□□ 1.15
CUX2-202ENST00000397643 APLP1P51693 650 aa22.26■■□□□ 1.15
CUX2-202ENST00000397643 DCAF5Q96JK2 942 aa22.26■■□□□ 1.15
CUX2-202ENST00000397643 ARFGEF1Q9Y6D6 1849 aa22.26■■□□□ 1.15
CUX2-202ENST00000397643 TOMM70O94826 608 aa22.25■■□□□ 1.15
CUX2-202ENST00000397643 KCNA3P22001 575 aa22.25■■□□□ 1.15
CUX2-202ENST00000397643 TNNT2P45379 298 aaPredicted RBP22.25■■□□□ 1.15
CUX2-202ENST00000397643 DNAJC5GQ8N7S2 189 aa22.25■■□□□ 1.15
CUX2-202ENST00000397643 NMRK2Q9NPI5 230 aa22.25■■□□□ 1.15
CUX2-202ENST00000397643 CCDC87Q9NVE4 849 aa22.25■■□□□ 1.15
CUX2-202ENST00000397643 HSP90AB1P08238 724 aaKnown RBP22.24■■□□□ 1.15
CUX2-202ENST00000397643 ARHGAP27Q6ZUM4 889 aa22.23■■□□□ 1.15
CUX2-202ENST00000397643 FCHSD2O94868 740 aa22.22■■□□□ 1.15
CUX2-202ENST00000397643 RFC4P35249 363 aa22.22■■□□□ 1.15
CUX2-202ENST00000397643 PARP3Q9Y6F1 533 aa22.22■■□□□ 1.15
CUX2-202ENST00000397643 TJP1Q07157 1748 aa22.22■■□□□ 1.15
CUX2-202ENST00000397643 ADAMTS7Q9UKP4 1686 aa22.21■■□□□ 1.15
CUX2-202ENST00000397643 PLEKHO1Q53GL0 409 aaPredicted RBP22.2■■□□□ 1.14
CUX2-202ENST00000397643 ZNF530Q6P9A1 599 aaPredicted RBP22.2■■□□□ 1.14
CUX2-202ENST00000397643 WDR90Q96KV7 1748 aa22.2■■□□□ 1.14
CUX2-202ENST00000397643 CABP4P57796 275 aa22.19■■□□□ 1.14
CUX2-202ENST00000397643 DDR1Q08345 913 aa22.19■■□□□ 1.14
CUX2-202ENST00000397643 C9orf131Q5VYM1 1079 aa22.19■■□□□ 1.14
CUX2-202ENST00000397643 AEBP1Q8IUX7 1158 aa22.19■■□□□ 1.14
CUX2-202ENST00000397643 SRP68Q9UHB9 627 aaKnown RBP22.19■■□□□ 1.14
CUX2-202ENST00000397643 USP42Q9H9J4 1324 aaKnown RBP22.18■■□□□ 1.14
CUX2-202ENST00000397643 CRKLP46109 303 aaKnown RBP22.18■■□□□ 1.14
CUX2-202ENST00000397643 AMOTQ4VCS5 1084 aa22.18■■□□□ 1.14
CUX2-202ENST00000397643 PTCD1O75127 700 aaKnown RBP22.17■■□□□ 1.14
CUX2-202ENST00000397643 FKBP8Q14318 412 aa22.17■■□□□ 1.14
CUX2-202ENST00000397643 RBM46Q8TBY0 533 aaKnown RBP22.16■■□□□ 1.14
CUX2-202ENST00000397643 KCPQ6ZWJ8 1503 aa22.16■■□□□ 1.14
CUX2-202ENST00000397643 MTHFSP49914 203 aa22.15■■□□□ 1.14
CUX2-202ENST00000397643 POLR3GLQ9BT43 218 aa22.15■■□□□ 1.14
CUX2-202ENST00000397643 PIM2Q9P1W9 311 aa22.15■■□□□ 1.14
CUX2-202ENST00000397643 NFATC2IPQ8NCF5 419 aa22.14■■□□□ 1.13
CUX2-202ENST00000397643 SCN11AQ9UI33 1791 aa22.14■■□□□ 1.13
CUX2-202ENST00000397643 INTS5Q6P9B9 1019 aaKnown RBP22.13■■□□□ 1.13
CUX2-202ENST00000397643 TIMELESSQ9UNS1 1208 aa22.13■■□□□ 1.13
CUX2-202ENST00000397643 SBF1O95248 1867 aa22.13■■□□□ 1.13
CUX2-202ENST00000397643 POLRMTO00411 1230 aaKnown RBP22.12■■□□□ 1.13
CUX2-202ENST00000397643 CHRNA5P30532 468 aa22.12■■□□□ 1.13
CUX2-202ENST00000397643 HTRA3P83110 453 aa22.12■■□□□ 1.13
CUX2-202ENST00000397643 DALRD3Q5D0E6 543 aaKnown RBP22.12■■□□□ 1.13
CUX2-202ENST00000397643 C1orf141Q5JVX7 400 aa22.12■■□□□ 1.13
CUX2-202ENST00000397643 PANK3Q9H999 370 aa22.11■■□□□ 1.13
CUX2-202ENST00000397643 TNRC6CQ9HCJ0 1690 aaKnown RBP22.11■■□□□ 1.13
CUX2-202ENST00000397643 TM4SF1P30408 202 aa22.1■■□□□ 1.13
CUX2-202ENST00000397643 RNF181Q9P0P0 153 aa22.1■■□□□ 1.13
CUX2-202ENST00000397643 MRC1P22897 1456 aa22.09■■□□□ 1.13
CUX2-202ENST00000397643 FSTL1Q12841 308 aa22.09■■□□□ 1.13
CUX2-202ENST00000397643 SULT6B1Q6IMI4 303 aa22.09■■□□□ 1.13
CUX2-202ENST00000397643 CCER1Q8TC90 406 aaPredicted RBP22.09■■□□□ 1.13
CUX2-202ENST00000397643 NRXN2Q9P2S2 1712 aa22.09■■□□□ 1.13
CUX2-202ENST00000397643 JMYQ8N9B5 988 aa22.08■■□□□ 1.13
CUX2-202ENST00000397643 KLRG1Q96E93 195 aa22.08■■□□□ 1.13
CUX2-202ENST00000397643 SOS1Q07889 1333 aaPredicted RBP22.07■■□□□ 1.12
CUX2-202ENST00000397643 KDM2BQ8NHM5 1336 aa22.07■■□□□ 1.12
CUX2-202ENST00000397643 IL13P35225 146 aa22.07■■□□□ 1.12
CUX2-202ENST00000397643 DNAJC10Q8IXB1 793 aa22.07■■□□□ 1.12
CUX2-202ENST00000397643 C16orf71Q8IYS4 520 aaPredicted RBP22.07■■□□□ 1.12
CUX2-202ENST00000397643 AFDNP55196 1824 aaKnown RBP22.07■■□□□ 1.12
CUX2-202ENST00000397643 PCNTO95613 3336 aa22.06■■□□□ 1.12
CUX2-202ENST00000397643 USPL1Q5W0Q7 1092 aa22.06■■□□□ 1.12
CUX2-202ENST00000397643 DLEC1Q9Y238 1755 aa22.05■■□□□ 1.12
CUX2-202ENST00000397643 MORC1Q86VD1 984 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms