RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ATP6V1AP38606 617 aa14.16□□□□□ -0.14
NEDD8-202ENST00000396828 C1QTNF8P60827 252 aa14.16□□□□□ -0.14
NEDD8-202ENST00000396828 AEBP1Q8IUX7 1158 aa14.16□□□□□ -0.14
NEDD8-202ENST00000396828 CD2APQ9Y5K6 639 aa14.16□□□□□ -0.14
NEDD8-202ENST00000396828 KDM6AO15550 1401 aaPredicted RBP14.15□□□□□ -0.14
NEDD8-202ENST00000396828 KDRP35968 1356 aa14.14□□□□□ -0.15
NEDD8-202ENST00000396828 GNPATO15228 680 aa14.14□□□□□ -0.15
NEDD8-202ENST00000396828 SSFA2P28290 1259 aa14.14□□□□□ -0.15
NEDD8-202ENST00000396828 ZNF316A6NFI3 1004 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-202ENST00000396828 GRIN3BO60391 1043 aa14.13□□□□□ -0.15
NEDD8-202ENST00000396828 MORC1Q86VD1 984 aa14.12□□□□□ -0.15
NEDD8-202ENST00000396828 SENP3-EIF4A1A0A087X0R7 540 aa14.11□□□□□ -0.15
NEDD8-202ENST00000396828 ERVV-2B6SEH9 535 aa14.11□□□□□ -0.15
NEDD8-202ENST00000396828 COL5A3P25940 1745 aaPredicted RBP14.11□□□□□ -0.15
NEDD8-202ENST00000396828 PLEKHO1Q53GL0 409 aaPredicted RBP14.11□□□□□ -0.15
NEDD8-202ENST00000396828 ZNF530Q6P9A1 599 aaPredicted RBP14.11□□□□□ -0.15
NEDD8-202ENST00000396828 DCAF5Q96JK2 942 aa14.11□□□□□ -0.15
NEDD8-202ENST00000396828 RBM42Q9BTD8 480 aaKnown RBP14.11□□□□□ -0.15
NEDD8-202ENST00000396828 MYH14Q7Z406 1995 aaKnown RBP14.11□□□□□ -0.15
NEDD8-202ENST00000396828 HMGB2P26583 209 aaKnown RBP14.1□□□□□ -0.15
NEDD8-202ENST00000396828 SULT6B1Q6IMI4 303 aa14.1□□□□□ -0.15
NEDD8-202ENST00000396828 GIGYF1O75420 1035 aaPredicted RBP14.09□□□□□ -0.15
NEDD8-202ENST00000396828 MMP10P09238 476 aa14.09□□□□□ -0.15
NEDD8-202ENST00000396828 IL13P35225 146 aa14.09□□□□□ -0.15
NEDD8-202ENST00000396828 CABP4P57796 275 aa14.09□□□□□ -0.15
NEDD8-202ENST00000396828 AMER1Q5JTC6 1135 aaPredicted RBP14.09□□□□□ -0.15
NEDD8-202ENST00000396828 KIAA1551Q9HCM1 1747 aa14.09□□□□□ -0.15
NEDD8-202ENST00000396828 PLEKHG2Q9H7P9 1386 aa14.09□□□□□ -0.15
NEDD8-202ENST00000396828 ATP10DQ9P241 1426 aa14.08□□□□□ -0.15
NEDD8-202ENST00000396828 ZNF831Q5JPB2 1677 aa14.08□□□□□ -0.16
NEDD8-202ENST00000396828 MTHFSP49914 203 aa14.08□□□□□ -0.16
NEDD8-202ENST00000396828 TRAPPC3LQ5T215 181 aa14.08□□□□□ -0.16
NEDD8-202ENST00000396828 NFATC2IPQ8NCF5 419 aa14.08□□□□□ -0.16
NEDD8-202ENST00000396828 ARHGEF1Q92888 912 aaKnown RBP14.08□□□□□ -0.16
NEDD8-202ENST00000396828 KIF7Q2M1P5 1343 aa14.08□□□□□ -0.16
NEDD8-202ENST00000396828 N4BP2Q86UW6 1770 aaPredicted RBP14.07□□□□□ -0.16
NEDD8-202ENST00000396828 PTCD1O75127 700 aaKnown RBP14.07□□□□□ -0.16
NEDD8-202ENST00000396828 AMOTQ4VCS5 1084 aa14.07□□□□□ -0.16
NEDD8-202ENST00000396828 RTCBQ9Y3I0 505 aaKnown RBP14.07□□□□□ -0.16
NEDD8-202ENST00000396828 KNSTRNQ9Y448 316 aa14.07□□□□□ -0.16
NEDD8-202ENST00000396828 CICQ96RK0 1608 aaPredicted RBP14.07□□□□□ -0.16
NEDD8-202ENST00000396828 HSP90AB1P08238 724 aaKnown RBP14.06□□□□□ -0.16
NEDD8-202ENST00000396828 GYS1P13807 737 aa14.06□□□□□ -0.16
NEDD8-202ENST00000396828 RC3H1Q5TC82 1133 aaKnown RBP14.06□□□□□ -0.16
NEDD8-202ENST00000396828 C4AP0C0L4 1744 aa14.06□□□□□ -0.16
NEDD8-202ENST00000396828 ADCY9O60503 1353 aa14.06□□□□□ -0.16
NEDD8-202ENST00000396828 KIF13BQ9NQT8 1826 aa14.06□□□□□ -0.16
NEDD8-202ENST00000396828 PXDNLA1KZ92 1463 aa14.06□□□□□ -0.16
NEDD8-202ENST00000396828 TJP1Q07157 1748 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 SCN11AQ9UI33 1791 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 A0A0G2JLW4 131 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 PER1O15534 1290 aaPredicted RBP14.05□□□□□ -0.16
NEDD8-202ENST00000396828 RPS6KA4O75676 772 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 ZNF526Q8TF50 670 aaPredicted RBP14.05□□□□□ -0.16
NEDD8-202ENST00000396828 LGR6Q9HBX8 967 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 CNTNAP4Q9C0A0 1308 aa14.05□□□□□ -0.16
NEDD8-202ENST00000396828 HMOX1P09601 288 aa14.04□□□□□ -0.16
NEDD8-202ENST00000396828 C1orf141Q5JVX7 400 aa14.04□□□□□ -0.16
NEDD8-202ENST00000396828 SRP68Q9UHB9 627 aaKnown RBP14.04□□□□□ -0.16
NEDD8-202ENST00000396828 NLGN1Q8N2Q7 840 aa14.03□□□□□ -0.16
NEDD8-202ENST00000396828 C10orf71Q711Q0 1435 aa14.02□□□□□ -0.16
NEDD8-202ENST00000396828 RFC4P35249 363 aa14.02□□□□□ -0.17
NEDD8-202ENST00000396828 CRKLP46109 303 aaKnown RBP14.02□□□□□ -0.17
NEDD8-202ENST00000396828 INTS5Q6P9B9 1019 aaKnown RBP14.02□□□□□ -0.17
NEDD8-202ENST00000396828 VIRMAQ69YN4 1812 aaKnown RBP14.01□□□□□ -0.17
NEDD8-202ENST00000396828 ADAMTS7Q9UKP4 1686 aa14.01□□□□□ -0.17
NEDD8-202ENST00000396828 DPEP1P16444 411 aa14.01□□□□□ -0.17
NEDD8-202ENST00000396828 KCNA3P22001 575 aa14.01□□□□□ -0.17
NEDD8-202ENST00000396828 FKBP8Q14318 412 aa14.01□□□□□ -0.17
NEDD8-202ENST00000396828 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
NEDD8-202ENST00000396828 GPBP1L1Q9HC44 474 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-202ENST00000396828 DDR1Q08345 913 aa14□□□□□ -0.17
NEDD8-202ENST00000396828 SLC39A6Q13433 755 aa14□□□□□ -0.17
NEDD8-202ENST00000396828 CNGB1Q14028 1251 aaPredicted RBP14□□□□□ -0.17
NEDD8-202ENST00000396828 MTHFSDQ2M296 383 aaKnown RBP14□□□□□ -0.17
NEDD8-202ENST00000396828 AKAP4Q5JQC9 854 aa14□□□□□ -0.17
NEDD8-202ENST00000396828 DNAJC10Q8IXB1 793 aa14□□□□□ -0.17
NEDD8-202ENST00000396828 BRCA1P38398 1863 aaKnown RBP13.99□□□□□ -0.17
NEDD8-202ENST00000396828 TGFB2P61812 414 aa13.99□□□□□ -0.17
NEDD8-202ENST00000396828 SLC52A2Q9HAB3 445 aa13.99□□□□□ -0.17
NEDD8-202ENST00000396828 BCS1LQ9Y276 419 aa13.99□□□□□ -0.17
NEDD8-202ENST00000396828 USP42Q9H9J4 1324 aaKnown RBP13.98□□□□□ -0.17
NEDD8-202ENST00000396828 RNMTO43148 476 aaKnown RBP13.98□□□□□ -0.17
NEDD8-202ENST00000396828 CCDC87Q9NVE4 849 aa13.98□□□□□ -0.17
NEDD8-202ENST00000396828 PARP3Q9Y6F1 533 aa13.98□□□□□ -0.17
NEDD8-202ENST00000396828 KCPQ6ZWJ8 1503 aa13.97□□□□□ -0.17
NEDD8-202ENST00000396828 MRC1P22897 1456 aa13.97□□□□□ -0.17
NEDD8-202ENST00000396828 COL3A1P02461 1466 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-202ENST00000396828 KIF3CO14782 793 aa13.96□□□□□ -0.17
NEDD8-202ENST00000396828 DIAPH1O60610 1272 aaKnown RBP13.96□□□□□ -0.17
NEDD8-202ENST00000396828 CYP19A1P11511 503 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-202ENST00000396828 ARHGAP27Q6ZUM4 889 aa13.96□□□□□ -0.17
NEDD8-202ENST00000396828 SOS1Q07889 1333 aaPredicted RBP13.95□□□□□ -0.18
NEDD8-202ENST00000396828 FCHSD2O94868 740 aa13.95□□□□□ -0.18
NEDD8-202ENST00000396828 TM4SF1P30408 202 aa13.95□□□□□ -0.18
NEDD8-202ENST00000396828 CHRNA5P30532 468 aa13.95□□□□□ -0.18
NEDD8-202ENST00000396828 USPL1Q5W0Q7 1092 aa13.95□□□□□ -0.18
NEDD8-202ENST00000396828 POLRMTO00411 1230 aaKnown RBP13.94□□□□□ -0.18
NEDD8-202ENST00000396828 BCL2L12Q9HB09 334 aa13.94□□□□□ -0.18
NEDD8-202ENST00000396828 ZBTB1Q9Y2K1 713 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms