RNA–Protein interactions for RNA: ENST00000396215.7

LDHC-202, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-202ENST00000396215 PCDH11YQ9BZA8 1340 aa13.78□□□□□ -0.2
LDHC-202ENST00000396215 RTL1A6NKG5 1358 aa13.78□□□□□ -0.2
LDHC-202ENST00000396215 N4BP2Q86UW6 1770 aaPredicted RBP13.78□□□□□ -0.2
LDHC-202ENST00000396215 ITGB4P16144 1822 aa13.78□□□□□ -0.2
LDHC-202ENST00000396215 A0A1W2PP64 1363 aa13.77□□□□□ -0.21
LDHC-202ENST00000396215 ROCK2O75116 1388 aaKnown RBP13.77□□□□□ -0.21
LDHC-202ENST00000396215 PHF14O94880 888 aa13.77□□□□□ -0.21
LDHC-202ENST00000396215 AMPHP49418 695 aa13.77□□□□□ -0.21
LDHC-202ENST00000396215 RAPGEF4Q8WZA2 1011 aa13.77□□□□□ -0.21
LDHC-202ENST00000396215 ARFGEF1Q9Y6D6 1849 aa13.76□□□□□ -0.21
LDHC-202ENST00000396215 KDM2BQ8NHM5 1336 aa13.76□□□□□ -0.21
LDHC-202ENST00000396215 MMP10P09238 476 aa13.76□□□□□ -0.21
LDHC-202ENST00000396215 TATP17735 454 aaPredicted RBP13.76□□□□□ -0.21
LDHC-202ENST00000396215 C9orf131Q5VYM1 1079 aa13.76□□□□□ -0.21
LDHC-202ENST00000396215 SMIM5Q71RC9 77 aa13.76□□□□□ -0.21
LDHC-202ENST00000396215 A0A0G2JLW4 131 aa13.75□□□□□ -0.21
LDHC-202ENST00000396215 CYP27B1O15528 508 aa13.75□□□□□ -0.21
LDHC-202ENST00000396215 NKX1-1Q15270 411 aaPredicted RBP13.75□□□□□ -0.21
LDHC-202ENST00000396215 LINC00116Q8NCU8 138 aa13.75□□□□□ -0.21
LDHC-202ENST00000396215 TMC1Q8TDI8 760 aa13.75□□□□□ -0.21
LDHC-202ENST00000396215 PKD1L3Q7Z443 1732 aa13.75□□□□□ -0.21
LDHC-202ENST00000396215 LOC102724428A0A0B4J2F2 783 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 HSPA1AP0DMV8 641 aaKnown RBP13.74□□□□□ -0.21
LDHC-202ENST00000396215 HSPA1BP0DMV9 641 aaKnown RBP13.74□□□□□ -0.21
LDHC-202ENST00000396215 KCNA3P22001 575 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 SIK1P57059 783 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 NLGN1Q8N2Q7 840 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 SMC1BQ8NDV3 1235 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 PIGBQ92521 554 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 COG3Q96JB2 828 aa13.74□□□□□ -0.21
LDHC-202ENST00000396215 TNRC6CQ9HCJ0 1690 aaKnown RBP13.74□□□□□ -0.21
LDHC-202ENST00000396215 FCHSD2O94868 740 aa13.73□□□□□ -0.21
LDHC-202ENST00000396215 DPEP1P16444 411 aa13.73□□□□□ -0.21
LDHC-202ENST00000396215 KCPQ6ZWJ8 1503 aa13.73□□□□□ -0.21
LDHC-202ENST00000396215 FBLN1P23142 703 aa13.72□□□□□ -0.21
LDHC-202ENST00000396215 RRAGCQ9HB90 399 aa13.72□□□□□ -0.21
LDHC-202ENST00000396215 GNPATO15228 680 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 TMF1P82094 1093 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 ITPK1Q13572 414 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 USHBP1Q8N6Y0 703 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 DCAF5Q96JK2 942 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 CCDC87Q9NVE4 849 aa13.71□□□□□ -0.21
LDHC-202ENST00000396215 SMG6Q86US8 1419 aaKnown RBP13.71□□□□□ -0.22
LDHC-202ENST00000396215 ZC3H4Q9UPT8 1303 aaKnown RBP13.7□□□□□ -0.22
LDHC-202ENST00000396215 SBF1O95248 1867 aa13.7□□□□□ -0.22
LDHC-202ENST00000396215 C4AP0C0L4 1744 aa13.7□□□□□ -0.22
LDHC-202ENST00000396215 INSRP06213 1382 aa13.7□□□□□ -0.22
LDHC-202ENST00000396215 TRAPPC3LQ5T215 181 aa13.69□□□□□ -0.22
LDHC-202ENST00000396215 PIM2Q9P1W9 311 aa13.69□□□□□ -0.22
LDHC-202ENST00000396215 KIF24Q5T7B8 1368 aa13.69□□□□□ -0.22
LDHC-202ENST00000396215 NCAPD2Q15021 1401 aa13.68□□□□□ -0.22
LDHC-202ENST00000396215 ATP6V1AP38606 617 aa13.68□□□□□ -0.22
LDHC-202ENST00000396215 RNF181Q9P0P0 153 aa13.68□□□□□ -0.22
LDHC-202ENST00000396215 ZNF831Q5JPB2 1677 aa13.68□□□□□ -0.22
LDHC-202ENST00000396215 GYS1P13807 737 aa13.67□□□□□ -0.22
LDHC-202ENST00000396215 RRS1Q15050 365 aaKnown RBP13.67□□□□□ -0.22
LDHC-202ENST00000396215 RC3H1Q5TC82 1133 aaKnown RBP13.67□□□□□ -0.22
LDHC-202ENST00000396215 PCDH10Q9P2E7 1040 aa13.67□□□□□ -0.22
LDHC-202ENST00000396215 RTCBQ9Y3I0 505 aaKnown RBP13.67□□□□□ -0.22
LDHC-202ENST00000396215 KDM6AO15550 1401 aaPredicted RBP13.66□□□□□ -0.22
LDHC-202ENST00000396215 HSP90AB2PQ58FF8 381 aa13.66□□□□□ -0.22
LDHC-202ENST00000396215 DALRD3Q5D0E6 543 aaKnown RBP13.66□□□□□ -0.22
LDHC-202ENST00000396215 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.66□□□□□ -0.22
LDHC-202ENST00000396215 ASAP1Q9ULH1 1129 aa13.66□□□□□ -0.22
LDHC-202ENST00000396215 VEGFAP15692 232 aaPredicted RBP13.65□□□□□ -0.22
LDHC-202ENST00000396215 ARHGEF1Q92888 912 aaKnown RBP13.65□□□□□ -0.22
LDHC-202ENST00000396215 TMOD3Q9NYL9 352 aa13.65□□□□□ -0.22
LDHC-202ENST00000396215 PARP3Q9Y6F1 533 aa13.65□□□□□ -0.22
LDHC-202ENST00000396215 KDRP35968 1356 aa13.65□□□□□ -0.22
LDHC-202ENST00000396215 FLT4P35916 1363 aa13.64□□□□□ -0.23
LDHC-202ENST00000396215 GLTPD2A6NH11 291 aa13.64□□□□□ -0.23
LDHC-202ENST00000396215 PRDM10Q9NQV6 1147 aa13.64□□□□□ -0.23
LDHC-202ENST00000396215 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
LDHC-202ENST00000396215 FYB1O15117 783 aa13.63□□□□□ -0.23
LDHC-202ENST00000396215 RPS6KA4O75676 772 aa13.63□□□□□ -0.23
LDHC-202ENST00000396215 SPG7Q9UQ90 795 aa13.63□□□□□ -0.23
LDHC-202ENST00000396215 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
LDHC-202ENST00000396215 TONSLQ96HA7 1378 aa13.62□□□□□ -0.23
LDHC-202ENST00000396215 SLC4A9Q96Q91 983 aa13.62□□□□□ -0.23
LDHC-202ENST00000396215 CARD11Q9BXL7 1154 aa13.62□□□□□ -0.23
LDHC-202ENST00000396215 COL5A3P25940 1745 aaPredicted RBP13.61□□□□□ -0.23
LDHC-202ENST00000396215 RFC4P35249 363 aa13.61□□□□□ -0.23
LDHC-202ENST00000396215 SLC24A1O60721 1099 aa13.6□□□□□ -0.23
LDHC-202ENST00000396215 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
LDHC-202ENST00000396215 MYH14Q7Z406 1995 aaKnown RBP13.6□□□□□ -0.23
LDHC-202ENST00000396215 POTECB2RU33 542 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 PHKG2P15735 406 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 LMNB1P20700 586 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 IFNL2Q8IZJ0 200 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 TESK2Q96S53 571 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 SIN3AQ96ST3 1273 aa13.59□□□□□ -0.23
LDHC-202ENST00000396215 FOXN1O15353 648 aa13.58□□□□□ -0.24
LDHC-202ENST00000396215 DDR1Q08345 913 aa13.58□□□□□ -0.24
LDHC-202ENST00000396215 GGNBP2Q9H3C7 697 aa13.58□□□□□ -0.24
LDHC-202ENST00000396215 ERVV-2B6SEH9 535 aa13.57□□□□□ -0.24
LDHC-202ENST00000396215 CHRNA5P30532 468 aa13.57□□□□□ -0.24
LDHC-202ENST00000396215 TM4SF1P30408 202 aa13.56□□□□□ -0.24
LDHC-202ENST00000396215 RASSF7Q02833 373 aa13.56□□□□□ -0.24
LDHC-202ENST00000396215 FKBP8Q14318 412 aa13.56□□□□□ -0.24
LDHC-202ENST00000396215 USP42Q9H9J4 1324 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms