RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 ATG3Q9NT62 314 aa29.18■■■□□ 2.26
TRAF4-203ENST00000394925 ADCY9O60503 1353 aa29.16■■■□□ 2.26
TRAF4-203ENST00000394925 TIMELESSQ9UNS1 1208 aa29.13■■■□□ 2.25
TRAF4-203ENST00000394925 MMP10P09238 476 aa29.12■■■□□ 2.25
TRAF4-203ENST00000394925 RBM42Q9BTD8 480 aaKnown RBP29.1■■■□□ 2.25
TRAF4-203ENST00000394925 TRAPPC3LQ5T215 181 aa29.09■■■□□ 2.25
TRAF4-203ENST00000394925 RTCBQ9Y3I0 505 aaKnown RBP29.09■■■□□ 2.25
TRAF4-203ENST00000394925 ERVV-2B6SEH9 535 aa29.08■■■□□ 2.25
TRAF4-203ENST00000394925 SLC4A9Q96Q91 983 aa29.08■■■□□ 2.25
TRAF4-203ENST00000394925 KDRP35968 1356 aa29.08■■■□□ 2.25
TRAF4-203ENST00000394925 PLEKHG2Q9H7P9 1386 aa29.06■■■□□ 2.24
TRAF4-203ENST00000394925 HSP90AB1P08238 724 aaKnown RBP29.05■■■□□ 2.24
TRAF4-203ENST00000394925 PLEKHO1Q53GL0 409 aaPredicted RBP29.05■■■□□ 2.24
TRAF4-203ENST00000394925 DCAF5Q96JK2 942 aa29.05■■■□□ 2.24
TRAF4-203ENST00000394925 NLGN1Q8N2Q7 840 aa29.04■■■□□ 2.24
TRAF4-203ENST00000394925 PXDNLA1KZ92 1463 aa29.04■■■□□ 2.24
TRAF4-203ENST00000394925 KIF13BQ9NQT8 1826 aa29.04■■■□□ 2.24
TRAF4-203ENST00000394925 CICQ96RK0 1608 aaPredicted RBP29.03■■■□□ 2.24
TRAF4-203ENST00000394925 HSPA6P17066 643 aa29.03■■■□□ 2.24
TRAF4-203ENST00000394925 ZNF530Q6P9A1 599 aaPredicted RBP29.03■■■□□ 2.24
TRAF4-203ENST00000394925 ARHGEF1Q92888 912 aaKnown RBP29.03■■■□□ 2.24
TRAF4-203ENST00000394925 PANK3Q9H999 370 aa29.03■■■□□ 2.24
TRAF4-203ENST00000394925 N4BP2Q86UW6 1770 aaPredicted RBP29.03■■■□□ 2.24
TRAF4-203ENST00000394925 RC3H1Q5TC82 1133 aaKnown RBP29.02■■■□□ 2.24
TRAF4-203ENST00000394925 ZNF831Q5JPB2 1677 aa29.02■■■□□ 2.24
TRAF4-203ENST00000394925 A0A0G2JLW4 131 aa29.01■■■□□ 2.23
TRAF4-203ENST00000394925 CABP4P57796 275 aa29.01■■■□□ 2.23
TRAF4-203ENST00000394925 TGFB2P61812 414 aa29.01■■■□□ 2.23
TRAF4-203ENST00000394925 BCS1LQ9Y276 419 aa29.01■■■□□ 2.23
TRAF4-203ENST00000394925 KIAA1551Q9HCM1 1747 aa29■■■□□ 2.23
TRAF4-203ENST00000394925 ADRA2BP18089 450 aa29■■■□□ 2.23
TRAF4-203ENST00000394925 KDM6AO15550 1401 aaPredicted RBP29■■■□□ 2.23
TRAF4-203ENST00000394925 COL5A3P25940 1745 aaPredicted RBP29■■■□□ 2.23
TRAF4-203ENST00000394925 CNTNAP4Q9C0A0 1308 aa28.99■■■□□ 2.23
TRAF4-203ENST00000394925 RPS6KA4O75676 772 aa28.99■■■□□ 2.23
TRAF4-203ENST00000394925 RFC4P35249 363 aa28.99■■■□□ 2.23
TRAF4-203ENST00000394925 AMOTQ4VCS5 1084 aa28.99■■■□□ 2.23
TRAF4-203ENST00000394925 PCGF6Q9BYE7 350 aa28.99■■■□□ 2.23
TRAF4-203ENST00000394925 KIF3CO14782 793 aa28.98■■■□□ 2.23
TRAF4-203ENST00000394925 GYS1P13807 737 aa28.98■■■□□ 2.23
TRAF4-203ENST00000394925 CCDC87Q9NVE4 849 aa28.98■■■□□ 2.23
TRAF4-203ENST00000394925 MYH14Q7Z406 1995 aaKnown RBP28.97■■■□□ 2.23
TRAF4-203ENST00000394925 C10orf71Q711Q0 1435 aa28.97■■■□□ 2.23
TRAF4-203ENST00000394925 MTHFSP49914 203 aa28.97■■■□□ 2.23
TRAF4-203ENST00000394925 EIF4G2P78344 907 aaKnown RBP eCLIP28.97■■■□□ 2.23
TRAF4-203ENST00000394925 AEBP1Q8IUX7 1158 aa28.97■■■□□ 2.23
TRAF4-203ENST00000394925 PTCD1O75127 700 aaKnown RBP28.96■■■□□ 2.23
TRAF4-203ENST00000394925 HSPA5P11021 654 aaKnown RBP28.96■■■□□ 2.23
TRAF4-203ENST00000394925 IFFO2Q5TF58 517 aa28.96■■■□□ 2.23
TRAF4-203ENST00000394925 PARP3Q9Y6F1 533 aa28.96■■■□□ 2.23
TRAF4-203ENST00000394925 CLSPNQ9HAW4 1339 aa28.95■■■□□ 2.23
TRAF4-203ENST00000394925 C4AP0C0L4 1744 aa28.95■■■□□ 2.23
TRAF4-203ENST00000394925 DPEP1P16444 411 aa28.95■■■□□ 2.22
TRAF4-203ENST00000394925 C1orf141Q5JVX7 400 aa28.95■■■□□ 2.22
TRAF4-203ENST00000394925 MORC1Q86VD1 984 aa28.95■■■□□ 2.22
TRAF4-203ENST00000394925 ARHGAP27Q6ZUM4 889 aa28.94■■■□□ 2.22
TRAF4-203ENST00000394925 NFATC2IPQ8NCF5 419 aa28.93■■■□□ 2.22
TRAF4-203ENST00000394925 FCHSD2O94868 740 aa28.92■■■□□ 2.22
TRAF4-203ENST00000394925 SULT6B1Q6IMI4 303 aa28.91■■■□□ 2.22
TRAF4-203ENST00000394925 CRKLP46109 303 aaKnown RBP28.9■■■□□ 2.22
TRAF4-203ENST00000394925 SRP68Q9UHB9 627 aaKnown RBP28.89■■■□□ 2.22
TRAF4-203ENST00000394925 BRCA1P38398 1863 aaKnown RBP28.88■■■□□ 2.21
TRAF4-203ENST00000394925 KCNA3P22001 575 aa28.86■■■□□ 2.21
TRAF4-203ENST00000394925 FKBP8Q14318 412 aa28.85■■■□□ 2.21
TRAF4-203ENST00000394925 TJP1Q07157 1748 aa28.84■■■□□ 2.21
TRAF4-203ENST00000394925 IL13P35225 146 aa28.84■■■□□ 2.21
TRAF4-203ENST00000394925 KNSTRNQ9Y448 316 aa28.84■■■□□ 2.21
TRAF4-203ENST00000394925 USP42Q9H9J4 1324 aaKnown RBP28.84■■■□□ 2.21
TRAF4-203ENST00000394925 PIM2Q9P1W9 311 aa28.83■■■□□ 2.21
TRAF4-203ENST00000394925 SCN11AQ9UI33 1791 aa28.83■■■□□ 2.21
TRAF4-203ENST00000394925 TOMM70O94826 608 aa28.82■■■□□ 2.2
TRAF4-203ENST00000394925 DDR1Q08345 913 aa28.82■■■□□ 2.2
TRAF4-203ENST00000394925 NMRK2Q9NPI5 230 aa28.82■■■□□ 2.2
TRAF4-203ENST00000394925 ARFGEF1Q9Y6D6 1849 aa28.82■■■□□ 2.2
TRAF4-203ENST00000394925 C9orf131Q5VYM1 1079 aa28.81■■■□□ 2.2
TRAF4-203ENST00000394925 INTS5Q6P9B9 1019 aaKnown RBP28.81■■■□□ 2.2
TRAF4-203ENST00000394925 APLP1P51693 650 aa28.8■■■□□ 2.2
TRAF4-203ENST00000394925 DALRD3Q5D0E6 543 aaKnown RBP28.79■■■□□ 2.2
TRAF4-203ENST00000394925 AKAP4Q5JQC9 854 aa28.79■■■□□ 2.2
TRAF4-203ENST00000394925 DNAJC10Q8IXB1 793 aa28.78■■■□□ 2.2
TRAF4-203ENST00000394925 CHRNA5P30532 468 aa28.77■■■□□ 2.2
TRAF4-203ENST00000394925 LGR6Q9HBX8 967 aa28.77■■■□□ 2.2
TRAF4-203ENST00000394925 SLC52A2Q9HAB3 445 aa28.76■■■□□ 2.19
TRAF4-203ENST00000394925 POLRMTO00411 1230 aaKnown RBP28.75■■■□□ 2.19
TRAF4-203ENST00000394925 ZPR1O75312 459 aa28.75■■■□□ 2.19
TRAF4-203ENST00000394925 TM4SF1P30408 202 aa28.75■■■□□ 2.19
TRAF4-203ENST00000394925 USPL1Q5W0Q7 1092 aa28.75■■■□□ 2.19
TRAF4-203ENST00000394925 ADAMTS7Q9UKP4 1686 aa28.74■■■□□ 2.19
TRAF4-203ENST00000394925 HMOX1P09601 288 aa28.73■■■□□ 2.19
TRAF4-203ENST00000394925 SLC39A6Q13433 755 aa28.73■■■□□ 2.19
TRAF4-203ENST00000394925 AMER1Q5JTC6 1135 aaPredicted RBP28.73■■■□□ 2.19
TRAF4-203ENST00000394925 SOS1Q07889 1333 aaPredicted RBP28.72■■■□□ 2.19
TRAF4-203ENST00000394925 RNMTO43148 476 aaKnown RBP28.72■■■□□ 2.19
TRAF4-203ENST00000394925 C16orf71Q8IYS4 520 aaPredicted RBP28.72■■■□□ 2.19
TRAF4-203ENST00000394925 RNF181Q9P0P0 153 aa28.72■■■□□ 2.19
TRAF4-203ENST00000394925 CYP19A1P11511 503 aaPredicted RBP28.71■■■□□ 2.19
TRAF4-203ENST00000394925 VIRMAQ69YN4 1812 aaKnown RBP28.71■■■□□ 2.19
TRAF4-203ENST00000394925 DNAJC5GQ8N7S2 189 aa28.7■■■□□ 2.18
TRAF4-203ENST00000394925 RBM46Q8TBY0 533 aaKnown RBP28.69■■■□□ 2.18
TRAF4-203ENST00000394925 KCPQ6ZWJ8 1503 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms