RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 SMARCC1Q92922 1105 aaPredicted RBP12.07□□□□□ -0.48
ATG4A-205ENST00000394892 TMOD3Q9NYL9 352 aa12.07□□□□□ -0.48
ATG4A-205ENST00000394892 COL3A1P02461 1466 aaPredicted RBP12.07□□□□□ -0.48
ATG4A-205ENST00000394892 ERVV-2B6SEH9 535 aa12.06□□□□□ -0.48
ATG4A-205ENST00000394892 HMOX1P09601 288 aa12.06□□□□□ -0.48
ATG4A-205ENST00000394892 MSL1Q68DK7 614 aa12.06□□□□□ -0.48
ATG4A-205ENST00000394892 DCAF5Q96JK2 942 aa12.06□□□□□ -0.48
ATG4A-205ENST00000394892 TUBGCP6Q96RT7 1819 aa12.05□□□□□ -0.48
ATG4A-205ENST00000394892 AMOTQ4VCS5 1084 aa12.05□□□□□ -0.48
ATG4A-205ENST00000394892 LGR6Q9HBX8 967 aa12.05□□□□□ -0.48
ATG4A-205ENST00000394892 KAT6BQ8WYB5 2073 aa12.04□□□□□ -0.48
ATG4A-205ENST00000394892 NLGN2Q8NFZ4 835 aa12.04□□□□□ -0.48
ATG4A-205ENST00000394892 COL24A1Q17RW2 1714 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 ITGB4P16144 1822 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.03□□□□□ -0.48
ATG4A-205ENST00000394892 ATP6V1AP38606 617 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 MTHFSDQ2M296 383 aaKnown RBP12.03□□□□□ -0.48
ATG4A-205ENST00000394892 NFATC2IPQ8NCF5 419 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 CHD4Q14839 1912 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 QSER1Q2KHR3 1735 aa12.03□□□□□ -0.48
ATG4A-205ENST00000394892 DIAPH1O60610 1272 aaKnown RBP12.02□□□□□ -0.49
ATG4A-205ENST00000394892 PHF14O94880 888 aa12.02□□□□□ -0.49
ATG4A-205ENST00000394892 FLAD1Q8NFF5 587 aa12.02□□□□□ -0.49
ATG4A-205ENST00000394892 C5P01031 1676 aa12.01□□□□□ -0.49
ATG4A-205ENST00000394892 C4BP0C0L5 1744 aa12.01□□□□□ -0.49
ATG4A-205ENST00000394892 HSP90AB1P08238 724 aaKnown RBP12.01□□□□□ -0.49
ATG4A-205ENST00000394892 CABP4P57796 275 aa12.01□□□□□ -0.49
ATG4A-205ENST00000394892 AK7Q96M32 723 aa12.01□□□□□ -0.49
ATG4A-205ENST00000394892 GNPATO15228 680 aa12□□□□□ -0.49
ATG4A-205ENST00000394892 RNMTO43148 476 aaKnown RBP12□□□□□ -0.49
ATG4A-205ENST00000394892 AKAP4Q5JQC9 854 aa12□□□□□ -0.49
ATG4A-205ENST00000394892 RBM42Q9BTD8 480 aaKnown RBP12□□□□□ -0.49
ATG4A-205ENST00000394892 PTCD1O75127 700 aaKnown RBP11.99□□□□□ -0.49
ATG4A-205ENST00000394892 SSFA2P28290 1259 aa11.99□□□□□ -0.49
ATG4A-205ENST00000394892 PPP2R1AP30153 589 aa11.99□□□□□ -0.49
ATG4A-205ENST00000394892 C1orf141Q5JVX7 400 aa11.99□□□□□ -0.49
ATG4A-205ENST00000394892 PHACTR3Q96KR7 559 aa11.99□□□□□ -0.49
ATG4A-205ENST00000394892 CD2APQ9Y5K6 639 aa11.99□□□□□ -0.49
ATG4A-205ENST00000394892 TAF1LQ8IZX4 1826 aa11.98□□□□□ -0.49
ATG4A-205ENST00000394892 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.49
ATG4A-205ENST00000394892 SLC39A6Q13433 755 aa11.98□□□□□ -0.49
ATG4A-205ENST00000394892 RC3H1Q5TC82 1133 aaKnown RBP11.98□□□□□ -0.49
ATG4A-205ENST00000394892 IL17REQ8NFR9 667 aa11.98□□□□□ -0.49
ATG4A-205ENST00000394892 SLC52A2Q9HAB3 445 aa11.98□□□□□ -0.49
ATG4A-205ENST00000394892 GOLGB1Q14789 3259 aaKnown RBP11.98□□□□□ -0.49
ATG4A-205ENST00000394892 U2SURPO15042 1029 aaKnown RBP11.97□□□□□ -0.49
ATG4A-205ENST00000394892 INTS5Q6P9B9 1019 aaKnown RBP11.97□□□□□ -0.49
ATG4A-205ENST00000394892 ARHGEF1Q92888 912 aaKnown RBP11.97□□□□□ -0.49
ATG4A-205ENST00000394892 GPBP1L1Q9HC44 474 aaPredicted RBP11.97□□□□□ -0.49
ATG4A-205ENST00000394892 MRC1P22897 1456 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 CNTNAP4Q9C0A0 1308 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 RPS6KA4O75676 772 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 IFFO2Q5TF58 517 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 DNAJC10Q8IXB1 793 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 RSPH6AQ9H0K4 717 aa11.96□□□□□ -0.49
ATG4A-205ENST00000394892 UBR3Q6ZT12 1888 aa11.95□□□□□ -0.5
ATG4A-205ENST00000394892 CRKLP46109 303 aaKnown RBP11.95□□□□□ -0.5
ATG4A-205ENST00000394892 ADAMTS7Q9UKP4 1686 aa11.94□□□□□ -0.5
ATG4A-205ENST00000394892 GYS1P13807 737 aa11.94□□□□□ -0.5
ATG4A-205ENST00000394892 SRP68Q9UHB9 627 aaKnown RBP11.94□□□□□ -0.5
ATG4A-205ENST00000394892 RTCBQ9Y3I0 505 aaKnown RBP11.94□□□□□ -0.5
ATG4A-205ENST00000394892 KCPQ6ZWJ8 1503 aa11.94□□□□□ -0.5
ATG4A-205ENST00000394892 KCNQ3O43525 872 aa11.93□□□□□ -0.5
ATG4A-205ENST00000394892 MMP10P09238 476 aa11.93□□□□□ -0.5
ATG4A-205ENST00000394892 CYP19A1P11511 503 aaPredicted RBP11.93□□□□□ -0.5
ATG4A-205ENST00000394892 PRKAR2BP31323 418 aa11.93□□□□□ -0.5
ATG4A-205ENST00000394892 TRAPPC3LQ5T215 181 aa11.93□□□□□ -0.5
ATG4A-205ENST00000394892 ATP10DQ9P241 1426 aa11.93□□□□□ -0.5
ATG4A-205ENST00000394892 ZNF831Q5JPB2 1677 aa11.92□□□□□ -0.5
ATG4A-205ENST00000394892 CEMIPQ8WUJ3 1361 aa11.92□□□□□ -0.5
ATG4A-205ENST00000394892 FKBP8Q14318 412 aa11.91□□□□□ -0.5
ATG4A-205ENST00000394892 ZNF526Q8TF50 670 aaPredicted RBP11.91□□□□□ -0.5
ATG4A-205ENST00000394892 WWC3Q9ULE0 1092 aa11.91□□□□□ -0.5
ATG4A-205ENST00000394892 TJP1Q07157 1748 aa11.91□□□□□ -0.5
ATG4A-205ENST00000394892 MYH14Q7Z406 1995 aaKnown RBP11.9□□□□□ -0.5
ATG4A-205ENST00000394892 SOS1Q07889 1333 aaPredicted RBP11.9□□□□□ -0.5
ATG4A-205ENST00000394892 GNAT3A8MTJ3 354 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 COL5A3P25940 1745 aaPredicted RBP11.9□□□□□ -0.5
ATG4A-205ENST00000394892 DDR1Q08345 913 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 GAS2L2Q8NHY3 880 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 ZNF496Q96IT1 587 aaPredicted RBP11.9□□□□□ -0.5
ATG4A-205ENST00000394892 BCL2L12Q9HB09 334 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 CCDC87Q9NVE4 849 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 ZBTB1Q9Y2K1 713 aa11.9□□□□□ -0.5
ATG4A-205ENST00000394892 SCN11AQ9UI33 1791 aa11.9□□□□□ -0.51
ATG4A-205ENST00000394892 USP42Q9H9J4 1324 aaKnown RBP11.89□□□□□ -0.51
ATG4A-205ENST00000394892 U2AF1L5P0DN76 240 aaPredicted RBP11.89□□□□□ -0.51
ATG4A-205ENST00000394892 HSPA6P17066 643 aa11.89□□□□□ -0.51
ATG4A-205ENST00000394892 U2AF1Q01081 240 aaKnown RBP eCLIP11.89□□□□□ -0.51
ATG4A-205ENST00000394892 CFAP53Q96M91 514 aa11.89□□□□□ -0.51
ATG4A-205ENST00000394892 CICQ96RK0 1608 aaPredicted RBP11.89□□□□□ -0.51
ATG4A-205ENST00000394892 FCHSD2O94868 740 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 TM4SF1P30408 202 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 RFC4P35249 363 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 DCTN1Q14203 1278 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 ZNF790Q6PG37 636 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 NLGN1Q8N2Q7 840 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 PLEKHF1Q96S99 279 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 PXDNLA1KZ92 1463 aa11.88□□□□□ -0.51
ATG4A-205ENST00000394892 C10orf71Q711Q0 1435 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms