RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 COL16A1Q07092 1604 aaPredicted RBP10.99□□□□□ -0.65
TDP1-203ENST00000393454 OVOS2A0A0G2JMS6 1433 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 KCNQ3O43525 872 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 CCDC30Q5VVM6 783 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 COL14A1Q05707 1796 aaKnown RBP10.99□□□□□ -0.65
TDP1-203ENST00000393454 PARP4Q9UKK3 1724 aaKnown RBP10.98□□□□□ -0.65
TDP1-203ENST00000393454 CYP27B1O15528 508 aa10.98□□□□□ -0.65
TDP1-203ENST00000393454 HSP90AB1P08238 724 aaKnown RBP10.98□□□□□ -0.65
TDP1-203ENST00000393454 EIF4A1P60842 406 aaKnown RBP10.98□□□□□ -0.65
TDP1-203ENST00000393454 CENPQQ7L2Z9 268 aaPredicted RBP10.98□□□□□ -0.65
TDP1-203ENST00000393454 PKD1L3Q7Z443 1732 aa10.98□□□□□ -0.65
TDP1-203ENST00000393454 KDM3BQ7LBC6 1761 aa10.98□□□□□ -0.65
TDP1-203ENST00000393454 DCAF5Q96JK2 942 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 PLEKHG2Q9H7P9 1386 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 EIF2S2P20042 333 aaKnown RBP10.97□□□□□ -0.65
TDP1-203ENST00000393454 SOS1Q07889 1333 aaPredicted RBP10.97□□□□□ -0.65
TDP1-203ENST00000393454 NFATC2IPQ8NCF5 419 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 DDX54Q8TDD1 881 aaKnown RBP10.97□□□□□ -0.65
TDP1-203ENST00000393454 PCDH11XQ9BZA7 1347 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 PCDH11YQ9BZA8 1340 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 SLC52A2Q9HAB3 445 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 SCN11AQ9UI33 1791 aa10.97□□□□□ -0.65
TDP1-203ENST00000393454 KDM6AO15550 1401 aaPredicted RBP10.96□□□□□ -0.65
TDP1-203ENST00000393454 PTPRCP08575 1304 aa10.96□□□□□ -0.65
TDP1-203ENST00000393454 HDGFL1Q5TGJ6 251 aa10.96□□□□□ -0.65
TDP1-203ENST00000393454 KDM2BQ8NHM5 1336 aa10.96□□□□□ -0.66
TDP1-203ENST00000393454 CABP4P57796 275 aa10.96□□□□□ -0.66
TDP1-203ENST00000393454 PCDHB15Q9Y5E8 787 aa10.96□□□□□ -0.66
TDP1-203ENST00000393454 SIPA1L3O60292 1781 aaPredicted RBP10.95□□□□□ -0.66
TDP1-203ENST00000393454 ABCC4O15439 1325 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 IGHDP01880 384 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 G2E3Q7L622 706 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 CERKQ8TCT0 537 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 CHMP4AQ9BY43 222 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 CHMP4BQ9H444 224 aaKnown RBP10.95□□□□□ -0.66
TDP1-203ENST00000393454 ADAMTS7Q9UKP4 1686 aa10.95□□□□□ -0.66
TDP1-203ENST00000393454 SLC39A6Q13433 755 aa10.94□□□□□ -0.66
TDP1-203ENST00000393454 HOXB7P09629 217 aa10.94□□□□□ -0.66
TDP1-203ENST00000393454 TTC5Q8N0Z6 440 aa10.94□□□□□ -0.66
TDP1-203ENST00000393454 RWDD1Q9H446 243 aaPredicted RBP10.94□□□□□ -0.66
TDP1-203ENST00000393454 TSHZ2Q9NRE2 1034 aa10.94□□□□□ -0.66
TDP1-203ENST00000393454 FKBP5Q13451 457 aaPredicted RBP10.93□□□□□ -0.66
TDP1-203ENST00000393454 ZNF790Q6PG37 636 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 SLC4A10Q6U841 1118 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 ZBTB40Q9NUA8 1239 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 CACNA1FO60840 1977 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 PLCH1Q4KWH8 1693 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 ZBTB7BO15156 539 aaPredicted RBP10.93□□□□□ -0.66
TDP1-203ENST00000393454 FLIIQ13045 1269 aa10.93□□□□□ -0.66
TDP1-203ENST00000393454 F6X3S4 739 aa10.92□□□□□ -0.66
TDP1-203ENST00000393454 GIGYF1O75420 1035 aaPredicted RBP10.92□□□□□ -0.66
TDP1-203ENST00000393454 INTS3Q68E01 1043 aaKnown RBP10.92□□□□□ -0.66
TDP1-203ENST00000393454 SKAP1Q86WV1 359 aa10.92□□□□□ -0.66
TDP1-203ENST00000393454 CHPF2Q9P2E5 772 aa10.92□□□□□ -0.66
TDP1-203ENST00000393454 CCDC9Q9Y3X0 531 aaKnown RBP10.92□□□□□ -0.66
TDP1-203ENST00000393454 RGS12O14924 1447 aa10.91□□□□□ -0.66
TDP1-203ENST00000393454 PRAMEF22A3QJZ6 481 aa10.91□□□□□ -0.66
TDP1-203ENST00000393454 ERVV-2B6SEH9 535 aa10.91□□□□□ -0.66
TDP1-203ENST00000393454 NKX1-1Q15270 411 aaPredicted RBP10.91□□□□□ -0.66
TDP1-203ENST00000393454 C1orf115Q9H7X2 142 aa10.91□□□□□ -0.66
TDP1-203ENST00000393454 PHAXQ9H814 394 aaKnown RBP10.91□□□□□ -0.66
TDP1-203ENST00000393454 JCADQ9P266 1359 aa10.91□□□□□ -0.66
TDP1-203ENST00000393454 EXOC5O00471 708 aa10.9□□□□□ -0.66
TDP1-203ENST00000393454 ANXA1P04083 346 aa10.9□□□□□ -0.66
TDP1-203ENST00000393454 SHANK3Q9BYB0 1731 aa10.9□□□□□ -0.66
TDP1-203ENST00000393454 MRC1P22897 1456 aa10.9□□□□□ -0.66
TDP1-203ENST00000393454 CCT4P50991 539 aaKnown RBP10.89□□□□□ -0.67
TDP1-203ENST00000393454 ZNF496Q96IT1 587 aaPredicted RBP10.89□□□□□ -0.67
TDP1-203ENST00000393454 NGLY1Q96IV0 654 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 C8orf37Q96NL8 207 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 FMNL2Q96PY5 1086 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 DBF4Q9UBU7 674 aaPredicted RBP10.89□□□□□ -0.67
TDP1-203ENST00000393454 HEG1Q9ULI3 1381 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 RGS3P49796 1198 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 SPATA31A1Q5TZJ5 1347 aa10.89□□□□□ -0.67
TDP1-203ENST00000393454 SNRPA1P09661 255 aaKnown RBP10.88□□□□□ -0.67
TDP1-203ENST00000393454 HDAC1Q13547 482 aaPredicted RBP10.88□□□□□ -0.67
TDP1-203ENST00000393454 NRAPQ86VF7 1730 aa10.88□□□□□ -0.67
TDP1-203ENST00000393454 DISP2A7MBM2 1401 aa10.88□□□□□ -0.67
TDP1-203ENST00000393454 KAT6BQ8WYB5 2073 aa10.88□□□□□ -0.67
TDP1-203ENST00000393454 TMOD3Q9NYL9 352 aa10.88□□□□□ -0.67
TDP1-203ENST00000393454 PROSER3Q2NL68 480 aa10.87□□□□□ -0.67
TDP1-203ENST00000393454 CDCA7Q9BWT1 371 aaPredicted RBP10.87□□□□□ -0.67
TDP1-203ENST00000393454 HYPKQ9NX55 129 aa10.87□□□□□ -0.67
TDP1-203ENST00000393454 THRAP3Q9Y2W1 955 aaKnown RBP10.87□□□□□ -0.67
TDP1-203ENST00000393454 NWD2Q9ULI1 1742 aa10.87□□□□□ -0.67
TDP1-203ENST00000393454 C5P01031 1676 aa10.87□□□□□ -0.67
TDP1-203ENST00000393454 UNC5CLQ8IV45 518 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 MEIS3Q99687 375 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 SPATA31A5Q5VU36 1347 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 SPATA31A7Q8IWB4 1347 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 SLIT2O94813 1529 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 MYL6BP14649 208 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 HSPA1LP34931 641 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 AIMP1Q12904 312 aaKnown RBP10.86□□□□□ -0.67
TDP1-203ENST00000393454 DDB1Q16531 1140 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 DDX21Q9NR30 783 aaKnown RBP eCLIP10.86□□□□□ -0.67
TDP1-203ENST00000393454 PDZRN3Q9UPQ7 1066 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 WNK3Q9BYP7 1800 aa10.86□□□□□ -0.67
TDP1-203ENST00000393454 PI4KAP2A4QPH2 592 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms