RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 HOXB7P09629 217 aa14.52□□□□□ -0.08
SMARCAL1-203ENST00000392128 CCDC30Q5VVM6 783 aa14.52□□□□□ -0.08
SMARCAL1-203ENST00000392128 RWDD1Q9H446 243 aaPredicted RBP14.52□□□□□ -0.08
SMARCAL1-203ENST00000392128 RBM19Q9Y4C8 960 aaKnown RBP14.52□□□□□ -0.08
SMARCAL1-203ENST00000392128 BTBD11A6QL63 1104 aa14.52□□□□□ -0.09
SMARCAL1-203ENST00000392128 PHKG2P15735 406 aa14.52□□□□□ -0.09
SMARCAL1-203ENST00000392128 EIF4A1P60842 406 aaKnown RBP14.52□□□□□ -0.09
SMARCAL1-203ENST00000392128 COL14A1Q05707 1796 aaKnown RBP14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 KDM6AO15550 1401 aaPredicted RBP14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 ZBTB7BO15156 539 aaPredicted RBP14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 STK31Q9BXU1 1019 aa14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 MRC1P22897 1456 aa14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 PHLPP1O60346 1717 aa14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 HDAC1Q13547 482 aaPredicted RBP14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 INTS3Q68E01 1043 aaKnown RBP14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 TOM1L2Q6ZVM7 507 aa14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 IFNL2Q8IZJ0 200 aa14.51□□□□□ -0.09
SMARCAL1-203ENST00000392128 CARD10Q9BWT7 1032 aa14.5□□□□□ -0.09
SMARCAL1-203ENST00000392128 CHMP4AQ9BY43 222 aa14.5□□□□□ -0.09
SMARCAL1-203ENST00000392128 COL16A1Q07092 1604 aaPredicted RBP14.5□□□□□ -0.09
SMARCAL1-203ENST00000392128 N4BP2Q86UW6 1770 aaPredicted RBP14.49□□□□□ -0.09
SMARCAL1-203ENST00000392128 SKAP1Q86WV1 359 aa14.49□□□□□ -0.09
SMARCAL1-203ENST00000392128 HEG1Q9ULI3 1381 aa14.48□□□□□ -0.09
SMARCAL1-203ENST00000392128 HSP90AB1P08238 724 aaKnown RBP14.48□□□□□ -0.09
SMARCAL1-203ENST00000392128 SHANK3Q9BYB0 1731 aa14.48□□□□□ -0.09
SMARCAL1-203ENST00000392128 CYP27B1O15528 508 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 KCNQ3O43525 872 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 HDGFL1Q5TGJ6 251 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 G2E3Q7L622 706 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 DCAF5Q96JK2 942 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 SLC52A2Q9HAB3 445 aa14.47□□□□□ -0.09
SMARCAL1-203ENST00000392128 EVA1CP58658 441 aa14.46□□□□□ -0.09
SMARCAL1-203ENST00000392128 PCDH11XQ9BZA7 1347 aa14.46□□□□□ -0.09
SMARCAL1-203ENST00000392128 PCDH11YQ9BZA8 1340 aa14.46□□□□□ -0.09
SMARCAL1-203ENST00000392128 FLIIQ13045 1269 aa14.46□□□□□ -0.09
SMARCAL1-203ENST00000392128 LARP1Q6PKG0 1096 aaKnown RBP14.46□□□□□ -0.09
SMARCAL1-203ENST00000392128 IL2RBP14784 551 aa14.45□□□□□ -0.1
SMARCAL1-203ENST00000392128 STRN4Q9NRL3 753 aa14.45□□□□□ -0.1
SMARCAL1-203ENST00000392128 PXDNLA1KZ92 1463 aa14.45□□□□□ -0.1
SMARCAL1-203ENST00000392128 TOM1O60784 492 aa14.45□□□□□ -0.1
SMARCAL1-203ENST00000392128 ZCRB1Q8TBF4 217 aaKnown RBP14.45□□□□□ -0.1
SMARCAL1-203ENST00000392128 NECTIN2Q92692 538 aa14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 PLCH1Q4KWH8 1693 aa14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 GIGYF1O75420 1035 aaPredicted RBP14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 CCT4P50991 539 aaKnown RBP14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 SMC5Q8IY18 1101 aa14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 BTG4Q9NY30 223 aa14.44□□□□□ -0.1
SMARCAL1-203ENST00000392128 FKBP5Q13451 457 aaPredicted RBP14.43□□□□□ -0.1
SMARCAL1-203ENST00000392128 ZNF790Q6PG37 636 aa14.43□□□□□ -0.1
SMARCAL1-203ENST00000392128 NFATC2IPQ8NCF5 419 aa14.43□□□□□ -0.1
SMARCAL1-203ENST00000392128 PDZRN3Q9UPQ7 1066 aa14.43□□□□□ -0.1
SMARCAL1-203ENST00000392128 C5P01031 1676 aa14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 EIF2S2P20042 333 aaKnown RBP14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 PDE4AP27815 886 aa14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 RGS3P49796 1198 aa14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 F6X3S4 739 aa14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 NKX1-1Q15270 411 aaPredicted RBP14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 BACH2Q9BYV9 841 aa14.42□□□□□ -0.1
SMARCAL1-203ENST00000392128 WNK3Q9BYP7 1800 aa14.41□□□□□ -0.1
SMARCAL1-203ENST00000392128 C1orf115Q9H7X2 142 aa14.41□□□□□ -0.1
SMARCAL1-203ENST00000392128 CHPF2Q9P2E5 772 aa14.41□□□□□ -0.1
SMARCAL1-203ENST00000392128 DBF4Q9UBU7 674 aaPredicted RBP14.41□□□□□ -0.1
SMARCAL1-203ENST00000392128 NRAPQ86VF7 1730 aa14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 ATP10DQ9P241 1426 aa14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 PAPPAQ13219 1627 aa14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 CABP4P57796 275 aa14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 SLC4A10Q6U841 1118 aa14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 PHAXQ9H814 394 aaKnown RBP14.4□□□□□ -0.1
SMARCAL1-203ENST00000392128 DISP2A7MBM2 1401 aa14.4□□□□□ -0.11
SMARCAL1-203ENST00000392128 UBR2Q8IWV8 1755 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 ERVV-2B6SEH9 535 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 SLC39A6Q13433 755 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 SIRT2Q8IXJ6 389 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 GCC1Q96CN9 775 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 LAMB4A4D0S4 1761 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 MEIS3Q99687 375 aa14.39□□□□□ -0.11
SMARCAL1-203ENST00000392128 GLI3P10071 1580 aa14.38□□□□□ -0.11
SMARCAL1-203ENST00000392128 RPAP2Q8IXW5 612 aaPredicted RBP14.38□□□□□ -0.11
SMARCAL1-203ENST00000392128 TOGARAM1Q9Y4F4 1720 aa14.38□□□□□ -0.11
SMARCAL1-203ENST00000392128 NWD2Q9ULI1 1742 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 PIP4K2BP78356 416 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 FAM161AQ3B820 660 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 TTC5Q8N0Z6 440 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 ANKRD44Q8N8A2 993 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 PRAMEF22A3QJZ6 481 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 NUCB1Q02818 461 aa14.37□□□□□ -0.11
SMARCAL1-203ENST00000392128 ZNF496Q96IT1 587 aaPredicted RBP14.36□□□□□ -0.11
SMARCAL1-203ENST00000392128 HYPKQ9NX55 129 aa14.36□□□□□ -0.11
SMARCAL1-203ENST00000392128 USP35Q9P2H5 1018 aa14.36□□□□□ -0.11
SMARCAL1-203ENST00000392128 CEP85Q6P2H3 762 aa14.36□□□□□ -0.11
SMARCAL1-203ENST00000392128 FMNL2Q96PY5 1086 aa14.36□□□□□ -0.11
SMARCAL1-203ENST00000392128 UBAP1LF5GYI3 381 aa14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 SNRPA1P09661 255 aaKnown RBP14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 C8orf34Q49A92 452 aa14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 DDX54Q8TDD1 881 aaKnown RBP14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 DDX21Q9NR30 783 aaKnown RBP eCLIP14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 GNAI3P08754 354 aa14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 ADCY9O60503 1353 aa14.35□□□□□ -0.11
SMARCAL1-203ENST00000392128 DNAAF4Q8WXU2 420 aa14.34□□□□□ -0.11
SMARCAL1-203ENST00000392128 LRP6O75581 1613 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms