RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SMC4Q9NTJ3 1288 aa15.9■□□□□ 0.14
CIITA-202ENST00000381835 TCERG1O14776 1098 aaKnown RBP15.89■□□□□ 0.13
CIITA-202ENST00000381835 CANXP27824 592 aaKnown RBP15.89■□□□□ 0.13
CIITA-202ENST00000381835 MEX3CQ5U5Q3 659 aaKnown RBP15.89■□□□□ 0.13
CIITA-202ENST00000381835 SSH1Q8WYL5 1049 aa15.89■□□□□ 0.13
CIITA-202ENST00000381835 KDM6AO15550 1401 aaPredicted RBP15.89■□□□□ 0.13
CIITA-202ENST00000381835 UNC5CLQ8IV45 518 aa15.89■□□□□ 0.13
CIITA-202ENST00000381835 SPATA31A1Q5TZJ5 1347 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 BTBD11A6QL63 1104 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 DCAF5Q96JK2 942 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 SHANK3Q9BYB0 1731 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 HSP90AB1P08238 724 aaKnown RBP15.88■□□□□ 0.13
CIITA-202ENST00000381835 C20orf194Q5TEA3 1177 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 BABAM1Q9NWV8 329 aa15.88■□□□□ 0.13
CIITA-202ENST00000381835 ADAMTS7Q9UKP4 1686 aa15.87■□□□□ 0.13
CIITA-202ENST00000381835 KAT6BQ8WYB5 2073 aa15.87■□□□□ 0.13
CIITA-202ENST00000381835 NPM2Q86SE8 214 aaKnown RBP15.87■□□□□ 0.13
CIITA-202ENST00000381835 SPATA31A5Q5VU36 1347 aa15.87■□□□□ 0.13
CIITA-202ENST00000381835 SPATA31A7Q8IWB4 1347 aa15.87■□□□□ 0.13
CIITA-202ENST00000381835 ZNF428Q96B54 188 aa15.86■□□□□ 0.13
CIITA-202ENST00000381835 DISP2A7MBM2 1401 aa15.86■□□□□ 0.13
CIITA-202ENST00000381835 WNK3Q9BYP7 1800 aa15.86■□□□□ 0.13
CIITA-202ENST00000381835 BCL9LQ86UU0 1499 aa15.86■□□□□ 0.13
CIITA-202ENST00000381835 FNBP4Q8N3X1 1017 aaPredicted RBP15.86■□□□□ 0.13
CIITA-202ENST00000381835 NFATC2IPQ8NCF5 419 aa15.86■□□□□ 0.13
CIITA-202ENST00000381835 SIPA1L3O60292 1781 aaPredicted RBP15.86■□□□□ 0.13
CIITA-202ENST00000381835 ALDH1L2Q3SY69 923 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 SLC52A2Q9HAB3 445 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 USP21Q9UK80 565 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 THRAP3Q9Y2W1 955 aaKnown RBP15.85■□□□□ 0.13
CIITA-202ENST00000381835 EXOC5O00471 708 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 KCNQ3O43525 872 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 KDM3BQ7LBC6 1761 aa15.85■□□□□ 0.13
CIITA-202ENST00000381835 PDE4AP27815 886 aa15.84■□□□□ 0.13
CIITA-202ENST00000381835 CABP4P57796 275 aa15.83■□□□□ 0.12
CIITA-202ENST00000381835 VPS72Q15906 364 aa15.83■□□□□ 0.12
CIITA-202ENST00000381835 CRBNQ96SW2 442 aa15.83■□□□□ 0.12
CIITA-202ENST00000381835 CDCA7Q9BWT1 371 aaPredicted RBP15.83■□□□□ 0.12
CIITA-202ENST00000381835 NOB1Q9ULX3 412 aaKnown RBP15.83■□□□□ 0.12
CIITA-202ENST00000381835 MS4A1P11836 297 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 EIF4A1P60842 406 aaKnown RBP15.82■□□□□ 0.12
CIITA-202ENST00000381835 SLC39A6Q13433 755 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 NKX1-1Q15270 411 aaPredicted RBP15.82■□□□□ 0.12
CIITA-202ENST00000381835 TNNQ9UQP3 1299 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 DDB1Q16531 1140 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 ZKSCAN2Q63HK3 967 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 MRPL50Q8N5N7 158 aaKnown RBP15.82■□□□□ 0.12
CIITA-202ENST00000381835 CLUAP1Q96AJ1 413 aa15.82■□□□□ 0.12
CIITA-202ENST00000381835 FAM98CQ17RN3 349 aaKnown RBP15.81■□□□□ 0.12
CIITA-202ENST00000381835 PANK1Q8TE04 598 aa15.81■□□□□ 0.12
CIITA-202ENST00000381835 AFF2P51816 1311 aa15.81■□□□□ 0.12
CIITA-202ENST00000381835 KIF16BQ96L93 1317 aa15.81■□□□□ 0.12
CIITA-202ENST00000381835 BARGINQ6ZT62 677 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 NECTIN2Q92692 538 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 BACH2Q9BYV9 841 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 MRC1P22897 1456 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 TNS2Q63HR2 1409 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 PDE3AQ14432 1141 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 ZNF790Q6PG37 636 aa15.8■□□□□ 0.12
CIITA-202ENST00000381835 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.8■□□□□ 0.12
CIITA-202ENST00000381835 ERVV-2B6SEH9 535 aa15.79■□□□□ 0.12
CIITA-202ENST00000381835 A0A0G2JS52 829 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 IPO8O15397 1037 aaKnown RBP15.78■□□□□ 0.12
CIITA-202ENST00000381835 TRIM27P14373 513 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 BRPF1P55201 1214 aaPredicted RBP15.78■□□□□ 0.12
CIITA-202ENST00000381835 ATF7IPQ6VMQ6 1270 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 FTSJ3Q8IY81 847 aaKnown RBP15.78■□□□□ 0.12
CIITA-202ENST00000381835 SLC4A2P04920 1241 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 RLBP1P12271 317 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 EIF2S2P20042 333 aaKnown RBP15.78■□□□□ 0.12
CIITA-202ENST00000381835 TTC5Q8N0Z6 440 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 COG6Q9Y2V7 657 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 TOGARAM1Q9Y4F4 1720 aa15.78■□□□□ 0.12
CIITA-202ENST00000381835 HDGFL1Q5TGJ6 251 aa15.77■□□□□ 0.12
CIITA-202ENST00000381835 SOS1Q07889 1333 aaPredicted RBP15.77■□□□□ 0.11
CIITA-202ENST00000381835 CCDC30Q5VVM6 783 aa15.77■□□□□ 0.11
CIITA-202ENST00000381835 DZIP1LQ8IYY4 767 aaKnown RBP15.77■□□□□ 0.11
CIITA-202ENST00000381835 STK31Q9BXU1 1019 aa15.77■□□□□ 0.11
CIITA-202ENST00000381835 PRAMEF22A3QJZ6 481 aa15.76■□□□□ 0.11
CIITA-202ENST00000381835 GIGYF1O75420 1035 aaPredicted RBP15.76■□□□□ 0.11
CIITA-202ENST00000381835 TMOD3Q9NYL9 352 aa15.76■□□□□ 0.11
CIITA-202ENST00000381835 ITGB4P16144 1822 aa15.75■□□□□ 0.11
CIITA-202ENST00000381835 CACNA1FO60840 1977 aa15.75■□□□□ 0.11
CIITA-202ENST00000381835 HOXB7P09629 217 aa15.75■□□□□ 0.11
CIITA-202ENST00000381835 ZNF496Q96IT1 587 aaPredicted RBP15.75■□□□□ 0.11
CIITA-202ENST00000381835 MARCH10Q8NA82 808 aaPredicted RBP15.74■□□□□ 0.11
CIITA-202ENST00000381835 SYTL4Q96C24 671 aaPredicted RBP15.74■□□□□ 0.11
CIITA-202ENST00000381835 GJD4Q96KN9 370 aaPredicted RBP15.74■□□□□ 0.11
CIITA-202ENST00000381835 HEG1Q9ULI3 1381 aa15.74■□□□□ 0.11
CIITA-202ENST00000381835 TRPC5Q9UL62 973 aaPredicted RBP15.74■□□□□ 0.11
CIITA-202ENST00000381835 ARHGAP45Q92619 1136 aa15.73■□□□□ 0.11
CIITA-202ENST00000381835 FMNL2Q96PY5 1086 aa15.73■□□□□ 0.11
CIITA-202ENST00000381835 G2E3Q7L622 706 aa15.73■□□□□ 0.11
CIITA-202ENST00000381835 PIGBQ92521 554 aa15.73■□□□□ 0.11
CIITA-202ENST00000381835 GLI3P10071 1580 aa15.72■□□□□ 0.11
CIITA-202ENST00000381835 QTRT2Q9H974 415 aaKnown RBP15.72■□□□□ 0.11
CIITA-202ENST00000381835 DOT1LQ8TEK3 1739 aa15.72■□□□□ 0.11
CIITA-202ENST00000381835 PTCD1O75127 700 aaKnown RBP15.72■□□□□ 0.11
CIITA-202ENST00000381835 ITPRIPQ8IWB1 547 aa15.72■□□□□ 0.11
CIITA-202ENST00000381835 TMEM57Q8N5G2 664 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms