RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 KIF7Q2M1P5 1343 aa23.51■■□□□ 1.35
HMGN1-204ENST00000380749 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.51■■□□□ 1.35
HMGN1-204ENST00000380749 ERVV-2B6SEH9 535 aa23.51■■□□□ 1.35
HMGN1-204ENST00000380749 ATP6V1AP38606 617 aa23.51■■□□□ 1.35
HMGN1-204ENST00000380749 ZNF530Q6P9A1 599 aaPredicted RBP23.51■■□□□ 1.35
HMGN1-204ENST00000380749 DCAF5Q96JK2 942 aa23.51■■□□□ 1.35
HMGN1-204ENST00000380749 KDRP35968 1356 aa23.5■■□□□ 1.35
HMGN1-204ENST00000380749 ATG3Q9NT62 314 aa23.5■■□□□ 1.35
HMGN1-204ENST00000380749 KDM6AO15550 1401 aaPredicted RBP23.5■■□□□ 1.35
HMGN1-204ENST00000380749 MYH14Q7Z406 1995 aaKnown RBP23.49■■□□□ 1.35
HMGN1-204ENST00000380749 GNPATO15228 680 aa23.48■■□□□ 1.35
HMGN1-204ENST00000380749 C1orf141Q5JVX7 400 aa23.48■■□□□ 1.35
HMGN1-204ENST00000380749 AMIGO3Q86WK7 504 aa23.48■■□□□ 1.35
HMGN1-204ENST00000380749 AEBP1Q8IUX7 1158 aa23.48■■□□□ 1.35
HMGN1-204ENST00000380749 C4AP0C0L4 1744 aa23.47■■□□□ 1.35
HMGN1-204ENST00000380749 ITPK1Q13572 414 aa23.47■■□□□ 1.35
HMGN1-204ENST00000380749 AMER1Q5JTC6 1135 aaPredicted RBP23.47■■□□□ 1.35
HMGN1-204ENST00000380749 CD2APQ9Y5K6 639 aa23.47■■□□□ 1.35
HMGN1-204ENST00000380749 KIF13BQ9NQT8 1826 aa23.46■■□□□ 1.35
HMGN1-204ENST00000380749 CICQ96RK0 1608 aaPredicted RBP23.46■■□□□ 1.35
HMGN1-204ENST00000380749 SULT6B1Q6IMI4 303 aa23.45■■□□□ 1.34
HMGN1-204ENST00000380749 GRIN3BO60391 1043 aa23.44■■□□□ 1.34
HMGN1-204ENST00000380749 CABP4P57796 275 aa23.44■■□□□ 1.34
HMGN1-204ENST00000380749 TJP1Q07157 1748 aa23.43■■□□□ 1.34
HMGN1-204ENST00000380749 MTHFSP49914 203 aa23.43■■□□□ 1.34
HMGN1-204ENST00000380749 RBM42Q9BTD8 480 aaKnown RBP23.43■■□□□ 1.34
HMGN1-204ENST00000380749 IL13P35225 146 aa23.42■■□□□ 1.34
HMGN1-204ENST00000380749 SMIM5Q71RC9 77 aa23.42■■□□□ 1.34
HMGN1-204ENST00000380749 YBX3P16989 372 aaKnown RBP eCLIP23.41■■□□□ 1.346e-11■□□□□ 9.1
HMGN1-204ENST00000380749 RTCBQ9Y3I0 505 aaKnown RBP23.4■■□□□ 1.34
HMGN1-204ENST00000380749 CNTNAP4Q9C0A0 1308 aa23.39■■□□□ 1.33
HMGN1-204ENST00000380749 SLC4A9Q96Q91 983 aa23.38■■□□□ 1.33
HMGN1-204ENST00000380749 MRC1P22897 1456 aa23.37■■□□□ 1.33
HMGN1-204ENST00000380749 N4BP2Q86UW6 1770 aaPredicted RBP23.37■■□□□ 1.33
HMGN1-204ENST00000380749 ADRA2BP18089 450 aa23.37■■□□□ 1.33
HMGN1-204ENST00000380749 RC3H1Q5TC82 1133 aaKnown RBP23.37■■□□□ 1.33
HMGN1-204ENST00000380749 KIAA1551Q9HCM1 1747 aa23.36■■□□□ 1.33
HMGN1-204ENST00000380749 ADAMTS7Q9UKP4 1686 aa23.36■■□□□ 1.33
HMGN1-204ENST00000380749 CC2D1BQ5T0F9 858 aaKnown RBP23.36■■□□□ 1.33
HMGN1-204ENST00000380749 TRAPPC3LQ5T215 181 aa23.36■■□□□ 1.33
HMGN1-204ENST00000380749 AKAP4Q5JQC9 854 aa23.35■■□□□ 1.33
HMGN1-204ENST00000380749 NPC1L1Q9UHC9 1359 aa23.34■■□□□ 1.33
HMGN1-204ENST00000380749 BRCA1P38398 1863 aaKnown RBP23.34■■□□□ 1.33
HMGN1-204ENST00000380749 PER1O15534 1290 aaPredicted RBP23.34■■□□□ 1.33
HMGN1-204ENST00000380749 MMP10P09238 476 aa23.34■■□□□ 1.33
HMGN1-204ENST00000380749 NFATC2IPQ8NCF5 419 aa23.34■■□□□ 1.33
HMGN1-204ENST00000380749 PTCD1O75127 700 aaKnown RBP23.33■■□□□ 1.33
HMGN1-204ENST00000380749 UBR2Q8IWV8 1755 aa23.33■■□□□ 1.32
HMGN1-204ENST00000380749 DIAPH1O60610 1272 aaKnown RBP23.32■■□□□ 1.32
HMGN1-204ENST00000380749 RPS6KA4O75676 772 aa23.32■■□□□ 1.32
HMGN1-204ENST00000380749 HMOX1P09601 288 aa23.32■■□□□ 1.32
HMGN1-204ENST00000380749 COL3A1P02461 1466 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-204ENST00000380749 RFC4P35249 363 aa23.31■■□□□ 1.32
HMGN1-204ENST00000380749 NLGN1Q8N2Q7 840 aa23.31■■□□□ 1.32
HMGN1-204ENST00000380749 ARHGEF1Q92888 912 aaKnown RBP23.3■■□□□ 1.32
HMGN1-204ENST00000380749 C10orf71Q711Q0 1435 aa23.3■■□□□ 1.32
HMGN1-204ENST00000380749 GIGYF1O75420 1035 aaPredicted RBP23.29■■□□□ 1.32
HMGN1-204ENST00000380749 SLC52A2Q9HAB3 445 aa23.29■■□□□ 1.32
HMGN1-204ENST00000380749 PXDNLA1KZ92 1463 aa23.28■■□□□ 1.32
HMGN1-204ENST00000380749 CRKLP46109 303 aaKnown RBP23.28■■□□□ 1.32
HMGN1-204ENST00000380749 ARFGEF1Q9Y6D6 1849 aa23.28■■□□□ 1.32
HMGN1-204ENST00000380749 SIPA1L3O60292 1781 aaPredicted RBP23.28■■□□□ 1.32
HMGN1-204ENST00000380749 WWC3Q9ULE0 1092 aa23.27■■□□□ 1.32
HMGN1-204ENST00000380749 ATP10DQ9P241 1426 aa23.27■■□□□ 1.32
HMGN1-204ENST00000380749 KCPQ6ZWJ8 1503 aa23.27■■□□□ 1.31
HMGN1-204ENST00000380749 GYS1P13807 737 aa23.27■■□□□ 1.31
HMGN1-204ENST00000380749 C1QTNF8P60827 252 aa23.27■■□□□ 1.31
HMGN1-204ENST00000380749 RNMTO43148 476 aaKnown RBP23.26■■□□□ 1.31
HMGN1-204ENST00000380749 CCDC87Q9NVE4 849 aa23.26■■□□□ 1.31
HMGN1-204ENST00000380749 CNGB1Q14028 1251 aaPredicted RBP23.25■■□□□ 1.31
HMGN1-204ENST00000380749 PARP3Q9Y6F1 533 aa23.25■■□□□ 1.31
HMGN1-204ENST00000380749 ADCY9O60503 1353 aa23.24■■□□□ 1.31
HMGN1-204ENST00000380749 MTHFSDQ2M296 383 aaKnown RBP23.24■■□□□ 1.31
HMGN1-204ENST00000380749 LGR6Q9HBX8 967 aa23.24■■□□□ 1.31
HMGN1-204ENST00000380749 AFDNP55196 1824 aaKnown RBP23.23■■□□□ 1.31
HMGN1-204ENST00000380749 CEP350Q5VT06 3117 aa23.23■■□□□ 1.31
HMGN1-204ENST00000380749 TGFB2P61812 414 aa23.23■■□□□ 1.31
HMGN1-204ENST00000380749 USP42Q9H9J4 1324 aaKnown RBP23.23■■□□□ 1.31
HMGN1-204ENST00000380749 U2SURPO15042 1029 aaKnown RBP23.22■■□□□ 1.31
HMGN1-204ENST00000380749 SENP3-EIF4A1A0A087X0R7 540 aa23.2■■□□□ 1.3
HMGN1-204ENST00000380749 DNAJC10Q8IXB1 793 aa23.2■■□□□ 1.3
HMGN1-204ENST00000380749 SLC39A6Q13433 755 aa23.19■■□□□ 1.3
HMGN1-204ENST00000380749 INTS5Q6P9B9 1019 aaKnown RBP23.19■■□□□ 1.3
HMGN1-204ENST00000380749 GAS2L2Q8NHY3 880 aa23.19■■□□□ 1.3
HMGN1-204ENST00000380749 SRP68Q9UHB9 627 aaKnown RBP23.19■■□□□ 1.3
HMGN1-204ENST00000380749 COL15A1P39059 1388 aa23.17■■□□□ 1.3
HMGN1-204ENST00000380749 SOS1Q07889 1333 aaPredicted RBP23.17■■□□□ 1.3
HMGN1-204ENST00000380749 CFAP53Q96M91 514 aa23.17■■□□□ 1.3
HMGN1-204ENST00000380749 GPBP1L1Q9HC44 474 aaPredicted RBP23.17■■□□□ 1.3
HMGN1-204ENST00000380749 A0A0G2JLW4 131 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 ZPR1O75312 459 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 FKBP8Q14318 412 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 TTC5Q8N0Z6 440 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 VSIG10Q8N0Z9 540 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 BCS1LQ9Y276 419 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 DLEC1Q9Y238 1755 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 NRXN2Q9P2S2 1712 aa23.16■■□□□ 1.3
HMGN1-204ENST00000380749 CYP19A1P11511 503 aaPredicted RBP23.15■■□□□ 1.3
HMGN1-204ENST00000380749 SCN7AQ01118 1682 aa23.15■■□□□ 1.3
HMGN1-204ENST00000380749 GNAT3A8MTJ3 354 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms