RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 TRIM66O15016 1216 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 CCDC192P0DO97 292 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.82□□□□□ -0.2
NPHP4-202ENST00000378161 CCDC102AQ96A19 550 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 ERLIN1O75477 346 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 CT47B1P0C2W7 299 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-202ENST00000378161 ERCC3P19447 782 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 AFAP1Q8N556 730 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 SLC24A3Q9HC58 644 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 CCDC141Q6ZP82 1450 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 IRX1P78414 480 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-202ENST00000378161 ANKRD7Q92527 254 aa13.82□□□□□ -0.2
NPHP4-202ENST00000378161 CLNS1AP54105 237 aaKnown RBP13.81□□□□□ -0.2
NPHP4-202ENST00000378161 NCBP1Q09161 790 aaKnown RBP13.81□□□□□ -0.2
NPHP4-202ENST00000378161 NAA25Q14CX7 972 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 ELF2Q15723 593 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 STK11IPQ8N1F8 1099 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 DUSP27Q5VZP5 1158 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 NOL8Q76FK4 1167 aaKnown RBP13.81□□□□□ -0.2
NPHP4-202ENST00000378161 RALGAPBQ86X10 1494 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 CCDC171Q6TFL3 1326 aa13.81□□□□□ -0.2
NPHP4-202ENST00000378161 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-202ENST00000378161 EZRP15311 586 aaKnown RBP13.8□□□□□ -0.2
NPHP4-202ENST00000378161 SLC4A10Q6U841 1118 aa13.8□□□□□ -0.2
NPHP4-202ENST00000378161 SHTN1A0MZ66 631 aa13.8□□□□□ -0.2
NPHP4-202ENST00000378161 MKRN1Q9UHC7 482 aaKnown RBP13.8□□□□□ -0.2
NPHP4-202ENST00000378161 ERLIN2O94905 339 aa13.79□□□□□ -0.2
NPHP4-202ENST00000378161 ZKSCAN8Q15776 578 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-202ENST00000378161 MINK1Q8N4C8 1332 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-202ENST00000378161 DNAJC21Q5F1R6 531 aaKnown RBP13.79□□□□□ -0.2
NPHP4-202ENST00000378161 ARFGAP3Q9NP61 516 aa13.79□□□□□ -0.2
NPHP4-202ENST00000378161 PLB1Q6P1J6 1458 aa13.79□□□□□ -0.2
NPHP4-202ENST00000378161 GNAI1P63096 354 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 CCDC183Q5T5S1 534 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 HCLS1P14317 486 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-202ENST00000378161 EXOSC9Q06265 439 aaKnown RBP13.78□□□□□ -0.2
NPHP4-202ENST00000378161 ARHGAP29Q52LW3 1261 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 ARHGEF11O15085 1522 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 NEDD9Q14511 834 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 WWC2Q6AWC2 1192 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 NUTM1Q86Y26 1132 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 DHX29Q7Z478 1369 aaKnown RBP13.78□□□□□ -0.2
NPHP4-202ENST00000378161 PLEKHH1Q9ULM0 1364 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 MVPQ14764 893 aaKnown RBP13.78□□□□□ -0.2
NPHP4-202ENST00000378161 SLC12A5Q9H2X9 1139 aa13.78□□□□□ -0.2
NPHP4-202ENST00000378161 FAM210AQ96ND0 272 aa13.77□□□□□ -0.2
NPHP4-202ENST00000378161 TRIM6Q9C030 488 aaPredicted RBP13.77□□□□□ -0.2
NPHP4-202ENST00000378161 GGNBP2Q9H3C7 697 aa13.77□□□□□ -0.2
NPHP4-202ENST00000378161 NKTRP30414 1462 aaKnown RBP13.77□□□□□ -0.2
NPHP4-202ENST00000378161 OAS2P29728 719 aaKnown RBP13.77□□□□□ -0.21
NPHP4-202ENST00000378161 MUM1L1Q5H9M0 696 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 FBXO18Q8NFZ0 1043 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 NUP133Q8WUM0 1156 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 IGHDP01880 384 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 EIF5P55010 431 aaKnown RBP13.77□□□□□ -0.21
NPHP4-202ENST00000378161 TMEM132EQ6IEE7 984 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 SRLQ86TD4 932 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 CTTNBP2Q8WZ74 1663 aa13.77□□□□□ -0.21
NPHP4-202ENST00000378161 ZNF608Q9ULD9 1512 aaPredicted RBP13.77□□□□□ -0.21
NPHP4-202ENST00000378161 LRPPRCP42704 1394 aaKnown RBP13.77□□□□□ -0.21
NPHP4-202ENST00000378161 NOP2P46087 812 aaKnown RBP13.76□□□□□ -0.21
NPHP4-202ENST00000378161 LMOD2Q6P5Q4 547 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 CEP57Q86XR8 500 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 SH3BP1Q9Y3L3 701 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 PARD3Q8TEW0 1356 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 GPATCH8Q9UKJ3 1502 aaKnown RBP13.76□□□□□ -0.21
NPHP4-202ENST00000378161 NEMFO60524 1076 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 COG3Q96JB2 828 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 GOPCQ9HD26 462 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 CASTP20810 708 aaKnown RBP13.76□□□□□ -0.21
NPHP4-202ENST00000378161 EFCAB13Q8IY85 973 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 RLBP1P12271 317 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 INTS3Q68E01 1043 aaKnown RBP13.76□□□□□ -0.21
NPHP4-202ENST00000378161 CCDC186Q7Z3E2 898 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 SH3GL3Q99963 347 aa13.76□□□□□ -0.21
NPHP4-202ENST00000378161 TRMT1Q9NXH9 659 aaKnown RBP13.76□□□□□ -0.21
NPHP4-202ENST00000378161 EBAG9O00559 213 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 CDC45O75419 566 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 ACTN2P35609 894 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 PDRG1Q9NUG6 133 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 HDAC1Q13547 482 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-202ENST00000378161 ATF7IPQ6VMQ6 1270 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 VPS18Q9P253 973 aa13.75□□□□□ -0.21
NPHP4-202ENST00000378161 FAM69CQ0P6D2 419 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 CEP89Q96ST8 783 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 CHMP3Q9Y3E7 222 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 KDM4AO75164 1064 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 OTUD6BQ8N6M0 293 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 CABP2Q9NPB3 220 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-202ENST00000378161 ZNF215Q9UL58 517 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-202ENST00000378161 CTAGE5O15320 804 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 ZRSR2Q15696 482 aaKnown RBP13.74□□□□□ -0.21
NPHP4-202ENST00000378161 POTEDQ86YR6 584 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 GCC1Q96CN9 775 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 SIRT1Q96EB6 747 aa13.74□□□□□ -0.21
NPHP4-202ENST00000378161 GRIN2AQ12879 1464 aa13.73□□□□□ -0.21
NPHP4-202ENST00000378161 PSMD2Q13200 908 aa13.73□□□□□ -0.21
NPHP4-202ENST00000378161 A0A087WUV0 522 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-202ENST00000378161 PTGS1P23219 599 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms