RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 PTPN14Q15678 1187 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 SMARCE1Q969G3 411 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 GNAT3A8MTJ3 354 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 ZSCAN22P10073 491 aaPredicted RBP10.35□□□□□ -0.75
PCDH9-202ENST00000377865 NOLC1Q14978 699 aaKnown RBP eCLIP10.35□□□□□ -0.75
PCDH9-202ENST00000377865 PPP4R3BQ5MIZ7 849 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 DCTPP1Q9H773 170 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 ANO10Q9NW15 660 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 CCDC9Q9Y3X0 531 aaKnown RBP10.35□□□□□ -0.75
PCDH9-202ENST00000377865 ABCC10Q5T3U5 1492 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 AACSQ86V21 672 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 NUTM1Q86Y26 1132 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 SMAP1Q8IYB5 467 aaPredicted RBP10.35□□□□□ -0.75
PCDH9-202ENST00000377865 MPNDQ8N594 471 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 PDILTQ8N807 584 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 TRAPPC8Q9Y2L5 1435 aa10.35□□□□□ -0.75
PCDH9-202ENST00000377865 ERICH2A1L162 156 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 PRIM1P49642 420 aaKnown RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 NUDT16Q96DE0 195 aaKnown RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 GTPBP4Q9BZE4 634 aaKnown RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 FSD2A1L4K1 749 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 ESYT1Q9BSJ8 1104 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 UPF3BQ9BZI7 483 aaKnown RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 CLIP2Q9UDT6 1046 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 MAGI2Q86UL8 1455 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 ME1P48163 572 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 GSDMDP57764 484 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 NLRP6P59044 892 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 KIF18AQ8NI77 898 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 IL1RAPL2Q9NP60 686 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 CCDC171Q6TFL3 1326 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 PIP4K2AP48426 406 aaPredicted RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 ZNF330Q9Y3S2 320 aaPredicted RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 CCDC61Q9Y6R9 512 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 PES1O00541 588 aaKnown RBP10.34□□□□□ -0.75
PCDH9-202ENST00000377865 ERLIN1O75477 346 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 FILIP1LQ4L180 1135 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 USP26Q9BXU7 913 aa10.34□□□□□ -0.75
PCDH9-202ENST00000377865 EIF3JO75822 258 aaKnown RBP10.33□□□□□ -0.76
PCDH9-202ENST00000377865 SERPINC1P01008 464 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 TNNT1P13805 278 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 STK3Q13188 491 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 TXNDC2Q86VQ3 553 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 DNAJC2Q99543 621 aaKnown RBP10.33□□□□□ -0.76
PCDH9-202ENST00000377865 MYO5CQ9NQX4 1742 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 LAMC1P11047 1609 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 GJB2P29033 226 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 PRDM10Q9NQV6 1147 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 SHROOM2Q13796 1616 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 PRPF40BQ6NWY9 871 aaKnown RBP10.33□□□□□ -0.76
PCDH9-202ENST00000377865 MCM10Q7L590 875 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 PLEKHM2Q8IWE5 1019 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 OSCARQ8IYS5 282 aa10.33□□□□□ -0.76
PCDH9-202ENST00000377865 FILIP1Q7Z7B0 1213 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 PPP1R9BQ96SB3 815 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 RUFY1Q96T51 708 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 XBP1P17861 261 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 PDE1AP54750 535 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 USP48Q86UV5 1035 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 BRMS1Q9HCU9 246 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 CALCOCO1Q9P1Z2 691 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 STX1AQ16623 288 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 NEUROD6Q96NK8 337 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 EMILIN1Q9Y6C2 1016 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 TRPM2O94759 1503 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 APPP05067 770 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 CAMK4Q16566 473 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 PODXL2Q9NZ53 605 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 PIK3R4Q99570 1358 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 HMGB1P09429 215 aaKnown RBP10.32□□□□□ -0.76
PCDH9-202ENST00000377865 CEBPZQ03701 1054 aaKnown RBP10.32□□□□□ -0.76
PCDH9-202ENST00000377865 WASHC4Q2M389 1173 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 ABCC1P33527 1531 aa10.32□□□□□ -0.76
PCDH9-202ENST00000377865 ZBTB7BO15156 539 aaPredicted RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 NPHP1O15259 732 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 PSME1Q06323 249 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 EVI5LQ96CN4 794 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 PREX2Q70Z35 1606 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 CD109Q6YHK3 1445 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 FYB1O15117 783 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 ZSCAN12O43309 604 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 VAMP4O75379 141 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 AIMP1Q12904 312 aaKnown RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 TMCO3Q6UWJ1 677 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 ZNF518AQ6AHZ1 1483 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 CDKL5O76039 1030 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 DCTN1Q14203 1278 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 RBM42Q9BTD8 480 aaKnown RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 SBNO2Q9Y2G9 1366 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 WASLO00401 505 aaPredicted RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 NME9Q86XW9 330 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 LRRFIP2Q9Y608 721 aaKnown RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 PTPRTO14522 1441 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 ABCA8O94911 1581 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 SAMD9LQ8IVG5 1584 aa10.31□□□□□ -0.76
PCDH9-202ENST00000377865 DENND4BO75064 1496 aaPredicted RBP10.31□□□□□ -0.76
PCDH9-202ENST00000377865 UBXN4Q92575 508 aa10.3□□□□□ -0.76
PCDH9-202ENST00000377865 HMG20BQ9P0W2 317 aa10.3□□□□□ -0.76
PCDH9-202ENST00000377865 CTNNA3Q9UI47 895 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms