RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 SEPT10Q9P0V9 454 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 CRACR2BQ8N4Y2 399 aaPredicted RBP12.34□□□□□ -0.43
RTN3-206ENST00000377819 TPD52P55327 224 aaPredicted RBP12.34□□□□□ -0.43
RTN3-206ENST00000377819 RRP1P56182 461 aaKnown RBP12.34□□□□□ -0.43
RTN3-206ENST00000377819 KIAA1524Q8TCG1 905 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 CEP126Q9P2H0 1117 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 SEC63Q9UGP8 760 aaKnown RBP12.34□□□□□ -0.43
RTN3-206ENST00000377819 SHROOM2Q13796 1616 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 KIF15Q9NS87 1388 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 CCDC160A6NGH7 325 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 SFPQP23246 707 aaKnown RBP eCLIP12.34□□□□□ -0.43
RTN3-206ENST00000377819 CFAP58Q5T655 872 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 PLCD3Q8N3E9 789 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 CCDC89Q8N998 374 aa12.34□□□□□ -0.43
RTN3-206ENST00000377819 IGF1RP08069 1367 aa12.33□□□□□ -0.43
RTN3-206ENST00000377819 TTC21AQ8NDW8 1320 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 ERICH4A6NGS2 130 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 POLR3GO15318 223 aaPredicted RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 RBM10P98175 930 aaKnown RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 TDRD12Q587J7 1177 aaKnown RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 SMARCC1Q92922 1105 aaPredicted RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 SMC6Q96SB8 1091 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 PLEKHO1Q53GL0 409 aaPredicted RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 APBB1IPQ7Z5R6 666 aaPredicted RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 RAI14Q9P0K7 980 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 CA8P35219 290 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 MXRA7P84157 204 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 BLOC1S2Q6QNY1 142 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 EIF4G3O43432 1585 aaKnown RBP12.33□□□□□ -0.44
RTN3-206ENST00000377819 CCDC96Q2M329 555 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 SMC1BQ8NDV3 1235 aa12.33□□□□□ -0.44
RTN3-206ENST00000377819 NLRP6P59044 892 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 CEP162Q5TB80 1403 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 CUL5Q93034 780 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 LRP2BPQ9P2M1 347 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 KIF3CO14782 793 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 CASQ1P31415 396 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 SNX16P57768 344 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 CCDC110Q8TBZ0 833 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 EHMT1Q9H9B1 1298 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 FEZ2Q9UHY8 353 aaPredicted RBP12.32□□□□□ -0.44
RTN3-206ENST00000377819 STXBP4Q6ZWJ1 553 aa12.32□□□□□ -0.44
RTN3-206ENST00000377819 GMNNO75496 209 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 UTP14AQ9BVJ6 771 aaKnown RBP12.31□□□□□ -0.44
RTN3-206ENST00000377819 CARMIL2Q6F5E8 1435 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 KRT32Q14532 448 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 SPATA32Q96LK8 384 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 STK3Q13188 491 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 TMEM266Q2M3C6 531 aa12.31□□□□□ -0.44
RTN3-206ENST00000377819 DZIP1Q86YF9 867 aaKnown RBP12.31□□□□□ -0.44
RTN3-206ENST00000377819 UQCRHLA0A096LP55 91 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 CCDC117Q8IWD4 279 aaPredicted RBP12.3□□□□□ -0.44
RTN3-206ENST00000377819 PPP6R1Q9UPN7 881 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 STX6O43752 255 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 OTUD6BQ8N6M0 293 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 NUP62CLQ9H1M0 184 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 CCDC196A0A1B0GTZ2 297 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 RFC1P35251 1148 aaPredicted RBP12.3□□□□□ -0.44
RTN3-206ENST00000377819 CEP112Q8N8E3 955 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 RUNDC1Q96C34 613 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 CCDC77Q9BR77 488 aa12.3□□□□□ -0.44
RTN3-206ENST00000377819 CLGNO14967 610 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 HMGB1P09429 215 aaKnown RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 DNA2P51530 1060 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 ARHGEF11O15085 1522 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 PRPF4BQ13523 1007 aaKnown RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 KIAA0753Q2KHM9 967 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 CALCOCO1Q9P1Z2 691 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 CEP83Q9Y592 693 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 A0A1W2PRG0 241 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 OPA1O60313 960 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 TNNT1P13805 278 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 RBM25P49756 843 aaKnown RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 CCDC155Q8N6L0 562 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 PKNOX2Q96KN3 472 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 ODF2LQ9ULJ1 636 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 UACAQ9BZF9 1416 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 TATP17735 454 aaPredicted RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 FKBP4Q02790 459 aaKnown RBP eCLIP12.29□□□□□ -0.44
RTN3-206ENST00000377819 ZBTB16Q05516 673 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 TCERG1LQ5VWI1 586 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 CCDC174Q6PII3 467 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 ATF7IPQ6VMQ6 1270 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 KIF18AQ8NI77 898 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 ZSCAN31Q96LW9 406 aaPredicted RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 MPHOSPH6Q99547 160 aaKnown RBP12.29□□□□□ -0.44
RTN3-206ENST00000377819 FAM184BQ9ULE4 1060 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 EFCAB5A4FU69 1503 aa12.29□□□□□ -0.44
RTN3-206ENST00000377819 URI1O94763 535 aaPredicted RBP12.28□□□□□ -0.44
RTN3-206ENST00000377819 RFX1P22670 979 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 MAPK8IP2Q13387 824 aaPredicted RBP12.28□□□□□ -0.44
RTN3-206ENST00000377819 PTPN14Q15678 1187 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 L3MBTL2Q969R5 705 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 PHAXQ9H814 394 aaKnown RBP12.28□□□□□ -0.44
RTN3-206ENST00000377819 MKNK2Q9HBH9 465 aa12.28□□□□□ -0.44
RTN3-206ENST00000377819 PUF60Q9UHX1 559 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms