RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GRIP2Q9C0E4 1043 aa5.04□□□□□ -1.6
VPS13A-206ENST00000376646 CENPCQ03188 943 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 WASHC4Q2M389 1173 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 NBPF10Q6P3W6 841 aaKnown RBP5.03□□□□□ -1.6
VPS13A-206ENST00000376646 NBPF15Q8N660 670 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 PLPP7Q8NBV4 271 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 NANOS1Q8WY41 292 aaKnown RBP5.03□□□□□ -1.6
VPS13A-206ENST00000376646 ETNK1Q9HBU6 452 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 GNRH1P01148 92 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 SV2AQ7L0J3 742 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 CCDC125Q86Z20 511 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 ESYT1Q9BSJ8 1104 aa5.03□□□□□ -1.6
VPS13A-206ENST00000376646 UBTFP17480 764 aaKnown RBP5.02□□□□□ -1.61
VPS13A-206ENST00000376646 GPC1P35052 558 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 DBN1Q16643 649 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 ADAMTS19Q8TE59 1207 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 CLUAP1Q96AJ1 413 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 CHIC2Q9UKJ5 165 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 USP4Q13107 963 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 DEPDC4Q8N2C3 294 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 WHAMMQ8TF30 809 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 ZNF837Q96EG3 531 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-206ENST00000376646 GPAMQ9HCL2 828 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 HRH3Q9Y5N1 445 aa5.02□□□□□ -1.61
VPS13A-206ENST00000376646 WASLO00401 505 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-206ENST00000376646 GAS6Q14393 721 aa5.01□□□□□ -1.61
VPS13A-206ENST00000376646 FHDC1Q9C0D6 1143 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-206ENST00000376646 ALG2Q9H553 416 aa5.01□□□□□ -1.61
VPS13A-206ENST00000376646 SCNN1DP51172 638 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 FZD5Q13467 585 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 TAS1R3Q7RTX0 852 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 TRIM52Q96A61 297 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 XAGE2Q96GT9 111 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 ZSCAN10Q96SZ4 725 aaPredicted RBP5□□□□□ -1.61
VPS13A-206ENST00000376646 TIMMDC1Q9NPL8 285 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 RAD21O60216 631 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 SKIP12755 728 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 GTPBP3Q969Y2 492 aaKnown RBP5□□□□□ -1.61
VPS13A-206ENST00000376646 SERTAD1Q9UHV2 236 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 DYRK1BQ9Y463 629 aa5□□□□□ -1.61
VPS13A-206ENST00000376646 SPATA31C2B4DYI2 1134 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 THBS1P07996 1170 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 GDF10P55107 478 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 TLR1Q15399 786 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 TMEM132AQ24JP5 1023 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 C4orf17Q53FE4 359 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 TMEM214Q6NUQ4 689 aaKnown RBP4.99□□□□□ -1.61
VPS13A-206ENST00000376646 FLIIQ13045 1269 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 TRIM22Q8IYM9 498 aa4.99□□□□□ -1.61
VPS13A-206ENST00000376646 SOX11P35716 441 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 NCOA4Q13772 614 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 ZNF385CQ66K41 422 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-206ENST00000376646 USP3Q9Y6I4 520 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 TMEM229AB2RXF0 380 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 INHAP05111 366 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 MAP7D1Q3KQU3 841 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 HDGFL1Q5TGJ6 251 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 UCN2Q96RP3 112 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 RUBCNLQ9H714 662 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 PCDHGA11Q9Y5H2 935 aa4.98□□□□□ -1.61
VPS13A-206ENST00000376646 ADAMTS2O95450 1211 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 ESCO1Q5FWF5 840 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 SVOPQ8N4V2 548 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 USP17L5A8MUK1 530 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 F11P03951 625 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 PLA2G4AP47712 749 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 TBC1D9Q6ZT07 1266 aa4.97□□□□□ -1.61
VPS13A-206ENST00000376646 NUCKS1Q9H1E3 243 aaKnown RBP4.97□□□□□ -1.61
VPS13A-206ENST00000376646 GNASQ5JWF2 1037 aa4.96□□□□□ -1.62
VPS13A-206ENST00000376646 SIRT1Q96EB6 747 aa4.96□□□□□ -1.62
VPS13A-206ENST00000376646 MSX1P28360 303 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 GTF2IP78347 998 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 PSME1Q06323 249 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 EML3Q32P44 896 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 LYPD4Q6UWN0 246 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 PPARGC1BQ86YN6 1023 aaKnown RBP4.95□□□□□ -1.62
VPS13A-206ENST00000376646 WWC1Q8IX03 1113 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS13A-206ENST00000376646 KIAA1024Q9UPX6 916 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 PARP3Q9Y6F1 533 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 SMTNP53814 917 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 WDR44Q5JSH3 913 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 TBCELQ5QJ74 424 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 RHBDD1Q8TEB9 315 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 ADAMTS8Q9UP79 889 aa4.95□□□□□ -1.62
VPS13A-206ENST00000376646 A0A1B0GTH6 734 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 H7C1W4 665 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 GTF2E1P29083 439 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-206ENST00000376646 PROSER2Q86WR7 435 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-206ENST00000376646 FNBP4Q8N3X1 1017 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-206ENST00000376646 AIDAQ96BJ3 306 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 NOD1Q9Y239 953 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 USP17L3A6NCW0 530 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 USP17L4A6NCW7 530 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 UBAP2LQ14157 1087 aaKnown RBP4.94□□□□□ -1.62
VPS13A-206ENST00000376646 USP17L2Q6R6M4 530 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 USP17L1Q7RTZ2 530 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 IQSEC3Q9UPP2 1182 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-206ENST00000376646 IGF1RP08069 1367 aa4.94□□□□□ -1.62
VPS13A-206ENST00000376646 A6NJY4 79 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms