RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 COPB2P35606 906 aa11.15□□□□□ -0.62
UBR4-201ENST00000375218 ICE2Q659A1 982 aa11.15□□□□□ -0.62
UBR4-201ENST00000375218 TANGO6Q9C0B7 1094 aa11.15□□□□□ -0.62
UBR4-201ENST00000375218 MARF1Q9Y4F3 1742 aaKnown RBP11.15□□□□□ -0.62
UBR4-201ENST00000375218 MTA1Q13330 715 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 PAGR1Q9BTK6 254 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 SETDB1Q15047 1291 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 TSNAXIP1Q2TAA8 658 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 ACRBPQ8NEB7 543 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 AGLP35573 1532 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 HSPA5P11021 654 aaKnown RBP11.14□□□□□ -0.63
UBR4-201ENST00000375218 CACTIN-AS1Q8N1I8 211 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 SFMBT1Q9UHJ3 866 aa11.14□□□□□ -0.63
UBR4-201ENST00000375218 TBX4P57082 545 aa11.13□□□□□ -0.63
UBR4-201ENST00000375218 FMNL3Q8IVF7 1028 aa11.13□□□□□ -0.63
UBR4-201ENST00000375218 PMFBP1Q8TBY8 1022 aa11.13□□□□□ -0.63
UBR4-201ENST00000375218 DISP3Q9P2K9 1392 aa11.13□□□□□ -0.63
UBR4-201ENST00000375218 IBSPP21815 317 aaPredicted RBP11.13□□□□□ -0.63
UBR4-201ENST00000375218 QRICH2Q9H0J4 1663 aa11.13□□□□□ -0.63
UBR4-201ENST00000375218 GTF2F1P35269 517 aaKnown RBP eCLIP11.13□□□□□ -0.63
UBR4-201ENST00000375218 SF3A1Q15459 793 aaKnown RBP11.12□□□□□ -0.63
UBR4-201ENST00000375218 NLGN1Q8N2Q7 840 aa11.12□□□□□ -0.63
UBR4-201ENST00000375218 PIK3C2GO75747 1445 aa11.12□□□□□ -0.63
UBR4-201ENST00000375218 EFCAB2Q5VUJ9 269 aa11.12□□□□□ -0.63
UBR4-201ENST00000375218 RNF217Q8TC41 542 aa11.12□□□□□ -0.63
UBR4-201ENST00000375218 ENOX1Q8TC92 643 aaKnown RBP11.12□□□□□ -0.63
UBR4-201ENST00000375218 PRR29P0C7W0 189 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 EP400NLQ6ZTU2 488 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 CHMP4CQ96CF2 233 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 TCEAL9Q9UHQ7 104 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 SHPRHQ149N8 1683 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 KIF7Q2M1P5 1343 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 TAF3Q5VWG9 929 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 RRM1P23921 792 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 ANKRD23Q86SG2 305 aa11.11□□□□□ -0.63
UBR4-201ENST00000375218 MYOM2P54296 1465 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 HMGN5P82970 282 aaKnown RBP11.1□□□□□ -0.63
UBR4-201ENST00000375218 CCAR1Q8IX12 1150 aaKnown RBP11.1□□□□□ -0.63
UBR4-201ENST00000375218 RSPH9Q9H1X1 276 aaPredicted RBP11.1□□□□□ -0.63
UBR4-201ENST00000375218 CCDC144BQ3MJ40 725 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 DDRGK1Q96HY6 314 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 C8orf37Q96NL8 207 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 SMAPO00193 183 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 NBPF10Q6P3W6 841 aaKnown RBP11.1□□□□□ -0.63
UBR4-201ENST00000375218 GPIHBP1Q8IV16 184 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 KCNB2Q92953 911 aa11.1□□□□□ -0.63
UBR4-201ENST00000375218 PAF1Q8N7H5 531 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 IRF2BPLQ9H1B7 796 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 PIF1Q9H611 641 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 SPAG9O60271 1321 aaKnown RBP11.09□□□□□ -0.63
UBR4-201ENST00000375218 ARHGAP31Q2M1Z3 1444 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 TCEAL1Q15170 157 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 INO80BQ9C086 356 aaPredicted RBP11.09□□□□□ -0.63
UBR4-201ENST00000375218 FEZ2Q9UHY8 353 aaPredicted RBP11.09□□□□□ -0.63
UBR4-201ENST00000375218 TULP4Q9NRJ4 1543 aa11.09□□□□□ -0.63
UBR4-201ENST00000375218 PPP4CP60510 307 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 DDX27Q96GQ7 796 aaKnown RBP11.08□□□□□ -0.64
UBR4-201ENST00000375218 SETBP1Q9Y6X0 1596 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 KDM5AP29375 1690 aaKnown RBP11.08□□□□□ -0.64
UBR4-201ENST00000375218 ERCC5P28715 1186 aaPredicted RBP11.08□□□□□ -0.64
UBR4-201ENST00000375218 SDE2Q6IQ49 451 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 TBC1D2Q9BYX2 928 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 ADGRF5Q8IZF2 1346 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 CCDC7Q96M83 1385 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 EIF3JO75822 258 aaKnown RBP11.08□□□□□ -0.64
UBR4-201ENST00000375218 FAM160A1Q05DH4 1040 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 TTC30AQ86WT1 665 aa11.08□□□□□ -0.64
UBR4-201ENST00000375218 DMGDHQ9UI17 866 aaKnown RBP11.08□□□□□ -0.64
UBR4-201ENST00000375218 POM121CA8CG34 1229 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 EGFLAMQ63HQ2 1017 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 JDP2Q8WYK2 163 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 COG6Q9Y2V7 657 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 MPHOSPH10O00566 681 aaKnown RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 U2AF1L5P0DN76 240 aaPredicted RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 U2AF1Q01081 240 aaKnown RBP eCLIP11.07□□□□□ -0.64
UBR4-201ENST00000375218 NUTM2GQ5VZR2 741 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 WDR75Q8IWA0 830 aaKnown RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 NOM1Q5C9Z4 860 aaKnown RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 TRIM52Q96A61 297 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 U3KPZ7 1027 aaPredicted RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 ERVK-7P63135 1459 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 RGPD8O14715 1765 aaPredicted RBP11.07□□□□□ -0.64
UBR4-201ENST00000375218 CD163L1Q9NR16 1453 aa11.07□□□□□ -0.64
UBR4-201ENST00000375218 PER1O15534 1290 aaPredicted RBP11.06□□□□□ -0.64
UBR4-201ENST00000375218 RSPH1Q8WYR4 309 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 TRIM34Q9BYJ4 488 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 CXorf56Q9H5V9 222 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 SWAP70Q9UH65 585 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 ZHX1Q9UKY1 873 aaPredicted RBP11.06□□□□□ -0.64
UBR4-201ENST00000375218 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.06□□□□□ -0.64
UBR4-201ENST00000375218 S100BP04271 92 aaPredicted RBP11.06□□□□□ -0.64
UBR4-201ENST00000375218 ZBTB47Q9UFB7 747 aaPredicted RBP11.06□□□□□ -0.64
UBR4-201ENST00000375218 ZHX3Q9H4I2 956 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 USP32Q8NFA0 1604 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 ADAMTSL3P82987 1691 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 ZSWIM4Q9H7M6 989 aa11.06□□□□□ -0.64
UBR4-201ENST00000375218 ZFYVE9O95405 1425 aa11.05□□□□□ -0.64
UBR4-201ENST00000375218 HDGFL1Q5TGJ6 251 aa11.05□□□□□ -0.64
UBR4-201ENST00000375218 PAIP2Q9BPZ3 127 aaKnown RBP11.05□□□□□ -0.64
UBR4-201ENST00000375218 STRCP1A6NGW2 1772 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms