RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ATP6V1AP38606 617 aa29.36■■■□□ 2.29
CCDC28B-201ENST00000373602 ITPK1Q13572 414 aa29.36■■■□□ 2.29
CCDC28B-201ENST00000373602 CNGB1Q14028 1251 aaPredicted RBP29.36■■■□□ 2.29
CCDC28B-201ENST00000373602 CABP4P57796 275 aa29.35■■■□□ 2.29
CCDC28B-201ENST00000373602 HMOX1P09601 288 aa29.34■■■□□ 2.29
CCDC28B-201ENST00000373602 AMIGO3Q86WK7 504 aa29.33■■■□□ 2.29
CCDC28B-201ENST00000373602 COL3A1P02461 1466 aaPredicted RBP29.33■■■□□ 2.29
CCDC28B-201ENST00000373602 UBR3Q6ZT12 1888 aa29.32■■■□□ 2.28
CCDC28B-201ENST00000373602 AKAP4Q5JQC9 854 aa29.31■■■□□ 2.28
CCDC28B-201ENST00000373602 SSFA2P28290 1259 aa29.3■■■□□ 2.28
CCDC28B-201ENST00000373602 MSL1Q68DK7 614 aa29.3■■■□□ 2.28
CCDC28B-201ENST00000373602 SLC4A9Q96Q91 983 aa29.3■■■□□ 2.28
CCDC28B-201ENST00000373602 ZNF831Q5JPB2 1677 aa29.29■■■□□ 2.28
CCDC28B-201ENST00000373602 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.29■■■□□ 2.28
CCDC28B-201ENST00000373602 RBM42Q9BTD8 480 aaKnown RBP29.29■■■□□ 2.28
CCDC28B-201ENST00000373602 PHF14O94880 888 aa29.28■■■□□ 2.28
CCDC28B-201ENST00000373602 SMIM5Q71RC9 77 aa29.28■■■□□ 2.28
CCDC28B-201ENST00000373602 NFATC2IPQ8NCF5 419 aa29.28■■■□□ 2.28
CCDC28B-201ENST00000373602 SCN11AQ9UI33 1791 aa29.27■■■□□ 2.28
CCDC28B-201ENST00000373602 KLHL34Q8N239 644 aa29.27■■■□□ 2.28
CCDC28B-201ENST00000373602 GNPATO15228 680 aa29.26■■■□□ 2.27
CCDC28B-201ENST00000373602 YY1P25490 414 aa29.25■■■□□ 2.27
CCDC28B-201ENST00000373602 MTHFSDQ2M296 383 aaKnown RBP29.25■■■□□ 2.27
CCDC28B-201ENST00000373602 U2SURPO15042 1029 aaKnown RBP29.23■■■□□ 2.27
CCDC28B-201ENST00000373602 LGR6Q9HBX8 967 aa29.23■■■□□ 2.27
CCDC28B-201ENST00000373602 RNMTO43148 476 aaKnown RBP29.22■■■□□ 2.27
CCDC28B-201ENST00000373602 RC3H1Q5TC82 1133 aaKnown RBP29.22■■■□□ 2.27
CCDC28B-201ENST00000373602 SLC52A2Q9HAB3 445 aa29.21■■■□□ 2.27
CCDC28B-201ENST00000373602 CNTNAP4Q9C0A0 1308 aa29.2■■■□□ 2.27
CCDC28B-201ENST00000373602 COL5A3P25940 1745 aaPredicted RBP29.2■■■□□ 2.27
CCDC28B-201ENST00000373602 PTCD1O75127 700 aaKnown RBP29.2■■■□□ 2.26
CCDC28B-201ENST00000373602 NLGN2Q8NFZ4 835 aa29.2■■■□□ 2.26
CCDC28B-201ENST00000373602 CFAP53Q96M91 514 aa29.2■■■□□ 2.26
CCDC28B-201ENST00000373602 MRC1P22897 1456 aa29.19■■■□□ 2.26
CCDC28B-201ENST00000373602 RTCBQ9Y3I0 505 aaKnown RBP29.19■■■□□ 2.26
CCDC28B-201ENST00000373602 PPP2R1AP30153 589 aa29.18■■■□□ 2.26
CCDC28B-201ENST00000373602 ADAMTS7Q9UKP4 1686 aa29.18■■■□□ 2.26
CCDC28B-201ENST00000373602 GPR162Q16538 588 aa29.16■■■□□ 2.26
CCDC28B-201ENST00000373602 TRAPPC3LQ5T215 181 aa29.16■■■□□ 2.26
CCDC28B-201ENST00000373602 CD2APQ9Y5K6 639 aa29.16■■■□□ 2.26
CCDC28B-201ENST00000373602 RPS6KA4O75676 772 aa29.15■■■□□ 2.26
CCDC28B-201ENST00000373602 ADRA2BP18089 450 aa29.15■■■□□ 2.26
CCDC28B-201ENST00000373602 CICQ96RK0 1608 aaPredicted RBP29.14■■■□□ 2.26
CCDC28B-201ENST00000373602 VIRMAQ69YN4 1812 aaKnown RBP29.14■■■□□ 2.26
CCDC28B-201ENST00000373602 GAS2L2Q8NHY3 880 aa29.13■■■□□ 2.25
CCDC28B-201ENST00000373602 TJP1Q07157 1748 aa29.12■■■□□ 2.25
CCDC28B-201ENST00000373602 MYH14Q7Z406 1995 aaKnown RBP29.12■■■□□ 2.25
CCDC28B-201ENST00000373602 ARHGEF1Q92888 912 aaKnown RBP29.12■■■□□ 2.25
CCDC28B-201ENST00000373602 NUDCQ9Y266 331 aa29.12■■■□□ 2.25
CCDC28B-201ENST00000373602 CRKLP46109 303 aaKnown RBP29.1■■■□□ 2.25
CCDC28B-201ENST00000373602 SLC39A6Q13433 755 aa29.1■■■□□ 2.25
CCDC28B-201ENST00000373602 RSPH6AQ9H0K4 717 aa29.1■■■□□ 2.25
CCDC28B-201ENST00000373602 GNAT3A8MTJ3 354 aa29.08■■■□□ 2.25
CCDC28B-201ENST00000373602 PRKAR2BP31323 418 aa29.08■■■□□ 2.25
CCDC28B-201ENST00000373602 PELP1Q8IZL8 1130 aaKnown RBP29.08■■■□□ 2.25
CCDC28B-201ENST00000373602 RFC4P35249 363 aa29.07■■■□□ 2.24
CCDC28B-201ENST00000373602 DNAJC10Q8IXB1 793 aa29.07■■■□□ 2.24
CCDC28B-201ENST00000373602 NLGN1Q8N2Q7 840 aa29.07■■■□□ 2.24
CCDC28B-201ENST00000373602 IL17REQ8NFR9 667 aa29.07■■■□□ 2.24
CCDC28B-201ENST00000373602 PHACTR3Q96KR7 559 aa29.07■■■□□ 2.24
CCDC28B-201ENST00000373602 CHD4Q14839 1912 aa29.06■■■□□ 2.24
CCDC28B-201ENST00000373602 KCPQ6ZWJ8 1503 aa29.06■■■□□ 2.24
CCDC28B-201ENST00000373602 MMP10P09238 476 aa29.05■■■□□ 2.24
CCDC28B-201ENST00000373602 U2AF1L5P0DN76 240 aaPredicted RBP29.05■■■□□ 2.24
CCDC28B-201ENST00000373602 U2AF1Q01081 240 aaKnown RBP eCLIP29.05■■■□□ 2.24
CCDC28B-201ENST00000373602 INTS5Q6P9B9 1019 aaKnown RBP29.05■■■□□ 2.24
CCDC28B-201ENST00000373602 GYS1P13807 737 aa29.04■■■□□ 2.24
CCDC28B-201ENST00000373602 YBX3P16989 372 aaKnown RBP eCLIP29.04■■■□□ 2.246e-8■□□□□ 8.4
CCDC28B-201ENST00000373602 FCHSD2O94868 740 aa29.03■■■□□ 2.24
CCDC28B-201ENST00000373602 VSIG10Q8N0Z9 540 aa29.03■■■□□ 2.24
CCDC28B-201ENST00000373602 C4AP0C0L4 1744 aa29.03■■■□□ 2.24
CCDC28B-201ENST00000373602 TEFQ10587 303 aa29.02■■■□□ 2.24
CCDC28B-201ENST00000373602 CCDC87Q9NVE4 849 aa29.02■■■□□ 2.24
CCDC28B-201ENST00000373602 GRIN3BO60391 1043 aa29.01■■■□□ 2.23
CCDC28B-201ENST00000373602 CYP19A1P11511 503 aaPredicted RBP29.01■■■□□ 2.23
CCDC28B-201ENST00000373602 UBR2Q8IWV8 1755 aa29.01■■■□□ 2.23
CCDC28B-201ENST00000373602 CEMIPQ8WUJ3 1361 aa29.01■■■□□ 2.23
CCDC28B-201ENST00000373602 UTRNP46939 3433 aa29■■■□□ 2.23
CCDC28B-201ENST00000373602 TTC5Q8N0Z6 440 aa28.99■■■□□ 2.23
CCDC28B-201ENST00000373602 USP42Q9H9J4 1324 aaKnown RBP28.98■■■□□ 2.23
CCDC28B-201ENST00000373602 SRP68Q9UHB9 627 aaKnown RBP28.98■■■□□ 2.23
CCDC28B-201ENST00000373602 SIPA1L3O60292 1781 aaPredicted RBP28.98■■■□□ 2.23
CCDC28B-201ENST00000373602 SOS1Q07889 1333 aaPredicted RBP28.97■■■□□ 2.23
CCDC28B-201ENST00000373602 ZNF790Q6PG37 636 aa28.97■■■□□ 2.23
CCDC28B-201ENST00000373602 ZNF784Q8NCA9 323 aaPredicted RBP28.96■■■□□ 2.23
CCDC28B-201ENST00000373602 ZNF496Q96IT1 587 aaPredicted RBP28.95■■■□□ 2.22
CCDC28B-201ENST00000373602 ZBTB1Q9Y2K1 713 aa28.94■■■□□ 2.22
CCDC28B-201ENST00000373602 PARP3Q9Y6F1 533 aa28.94■■■□□ 2.22
CCDC28B-201ENST00000373602 KIF13BQ9NQT8 1826 aa28.93■■■□□ 2.22
CCDC28B-201ENST00000373602 FKBP8Q14318 412 aa28.93■■■□□ 2.22
CCDC28B-201ENST00000373602 C10orf71Q711Q0 1435 aa28.93■■■□□ 2.22
CCDC28B-201ENST00000373602 HEG1Q9ULI3 1381 aa28.92■■■□□ 2.22
CCDC28B-201ENST00000373602 RTF1Q92541 710 aaKnown RBP28.91■■■□□ 2.22
CCDC28B-201ENST00000373602 COL15A1P39059 1388 aa28.9■■■□□ 2.22
CCDC28B-201ENST00000373602 ZPR1O75312 459 aa28.9■■■□□ 2.22
CCDC28B-201ENST00000373602 STARD3NLO95772 234 aa28.9■■■□□ 2.22
CCDC28B-201ENST00000373602 TGFB2P61812 414 aa28.9■■■□□ 2.22
CCDC28B-201ENST00000373602 TEX13AQ9BXU3 409 aaPredicted RBP28.9■■■□□ 2.22
CCDC28B-201ENST00000373602 BTBD11A6QL63 1104 aa28.89■■■□□ 2.22
CCDC28B-201ENST00000373602 HTATSF1O43719 755 aaKnown RBP28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms