RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 TWISTNBQ3B726 338 aaPredicted RBP13.83□□□□□ -0.2
PTPN1-201ENST00000371621 MEX3CQ5U5Q3 659 aaKnown RBP13.83□□□□□ -0.2
PTPN1-201ENST00000371621 CEP57L1Q8IYX8 460 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 JAKMIP1Q96N16 626 aaKnown RBP13.83□□□□□ -0.2
PTPN1-201ENST00000371621 LRRCC1Q9C099 1032 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 TRIM66O15016 1216 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 OAS2P29728 719 aaKnown RBP13.82□□□□□ -0.2
PTPN1-201ENST00000371621 CFAP70Q5T0N1 1121 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 CEP57Q86XR8 500 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 KIAA1524Q8TCG1 905 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 DISP3Q9P2K9 1392 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 GYS2P54840 703 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 AKAP17AQ02040 695 aaKnown RBP13.82□□□□□ -0.2
PTPN1-201ENST00000371621 HSP90AA4PQ58FG1 418 aa13.82□□□□□ -0.2
PTPN1-201ENST00000371621 RNF187Q5TA31 235 aaPredicted RBP13.82□□□□□ -0.2
PTPN1-201ENST00000371621 ERCC4Q92889 916 aaPredicted RBP13.82□□□□□ -0.2
PTPN1-201ENST00000371621 PRG4Q92954 1404 aaPredicted RBP13.82□□□□□ -0.2
PTPN1-201ENST00000371621 CASQ1P31415 396 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 MAP2K2P36507 400 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 PLPPR3Q6T4P5 718 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 CAGE1Q8TC20 777 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 FAM107BQ9H098 131 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 ZCCHC17Q9NP64 241 aaKnown RBP13.81□□□□□ -0.2
PTPN1-201ENST00000371621 CCDC171Q6TFL3 1326 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 PDCP20941 246 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 DDX41Q9UJV9 622 aaKnown RBP13.81□□□□□ -0.2
PTPN1-201ENST00000371621 JRKLQ9Y4A0 524 aa13.81□□□□□ -0.2
PTPN1-201ENST00000371621 SMARCC1Q92922 1105 aaPredicted RBP13.8□□□□□ -0.2
PTPN1-201ENST00000371621 MYO1CO00159 1063 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 IVLP07476 585 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 NECAB1Q8N987 351 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 CTNNA3Q9UI47 895 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 SURF6O75683 361 aaKnown RBP13.8□□□□□ -0.2
PTPN1-201ENST00000371621 ZSCAN22P10073 491 aaPredicted RBP13.8□□□□□ -0.2
PTPN1-201ENST00000371621 GJB2P29033 226 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 PRKAR2BP31323 418 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 FBXO38Q6PIJ6 1188 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 OTUD7AQ8TE49 926 aaPredicted RBP13.8□□□□□ -0.2
PTPN1-201ENST00000371621 USP26Q9BXU7 913 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 CCDC70Q6NSX1 233 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 RUFY2Q8WXA3 655 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 SRCIN1Q9C0H9 1055 aa13.8□□□□□ -0.2
PTPN1-201ENST00000371621 EHBP1L1Q8N3D4 1523 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 CFAP43Q8NDM7 1665 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 KIF4BQ2VIQ3 1234 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 TTC22Q5TAA0 569 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 TCEANC2Q96MN5 208 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 CARD6Q9BX69 1037 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 CCP110O43303 1012 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 TPM1P09493 284 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 TMPOP42166 694 aaKnown RBP13.79□□□□□ -0.2
PTPN1-201ENST00000371621 PPARDQ03181 441 aa13.79□□□□□ -0.2
PTPN1-201ENST00000371621 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.79□□□□□ -0.2
PTPN1-201ENST00000371621 EVCP57679 992 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 TEX2Q8IWB9 1127 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 PDRG1Q9NUG6 133 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 TERF2IPQ9NYB0 399 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 ATP2C2O75185 946 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 DNAJC21Q5F1R6 531 aaKnown RBP13.78□□□□□ -0.2
PTPN1-201ENST00000371621 GBP6Q6ZN66 633 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 CRACR2AQ9BSW2 395 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SIL1Q9H173 461 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 PLEKHA4Q9H4M7 779 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SPG7Q9UQ90 795 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SUPT6HQ7KZ85 1726 aaKnown RBP13.78□□□□□ -0.2
PTPN1-201ENST00000371621 PLB1Q6P1J6 1458 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SPAG9O60271 1321 aaKnown RBP13.78□□□□□ -0.2
PTPN1-201ENST00000371621 KIAA0586Q9BVV6 1533 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 TARBP1Q13395 1621 aaKnown RBP13.78□□□□□ -0.2
PTPN1-201ENST00000371621 KIF3BO15066 747 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SEC31AO94979 1220 aaKnown RBP13.78□□□□□ -0.2
PTPN1-201ENST00000371621 TMEM132EQ6IEE7 984 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 GGT6Q6P531 493 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 FAM212AQ96EL1 285 aa13.78□□□□□ -0.2
PTPN1-201ENST00000371621 SMC1AQ14683 1233 aaKnown RBP13.77□□□□□ -0.2
PTPN1-201ENST00000371621 TSR1Q2NL82 804 aaKnown RBP13.77□□□□□ -0.2
PTPN1-201ENST00000371621 ICE2Q659A1 982 aa13.77□□□□□ -0.2
PTPN1-201ENST00000371621 NUTM1Q86Y26 1132 aa13.77□□□□□ -0.2
PTPN1-201ENST00000371621 RRP15Q9Y3B9 282 aaKnown RBP13.77□□□□□ -0.2
PTPN1-201ENST00000371621 SHTN1A0MZ66 631 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 NF2P35240 595 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 GNAI1P63096 354 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 GRIN2AQ12879 1464 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 CCDC12Q8WUD4 166 aaPredicted RBP13.77□□□□□ -0.21
PTPN1-201ENST00000371621 CPLX3Q8WVH0 158 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 GPATCH3Q96I76 525 aa13.77□□□□□ -0.21
PTPN1-201ENST00000371621 PUF60Q9UHX1 559 aaKnown RBP13.77□□□□□ -0.21
PTPN1-201ENST00000371621 GUCY1B3Q02153 619 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 PPP2R5AQ15172 486 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 ZSCAN25Q6NSZ9 544 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 SYNE3Q6ZMZ3 975 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 THOC2Q8NI27 1593 aaKnown RBP13.76□□□□□ -0.21
PTPN1-201ENST00000371621 GPRASP1Q5JY77 1395 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 GOLIM4O00461 696 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 NEMFO60524 1076 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 SSBP05455 408 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTPN1-201ENST00000371621 CPA1P15085 419 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 MLECQ14165 292 aa13.76□□□□□ -0.21
PTPN1-201ENST00000371621 KMT5BQ4FZB7 885 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms