RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 PALLDQ8WX93 1383 aa14.34□□□□□ -0.11
CLRN3-201ENST00000368671 CYP27B1O15528 508 aa14.33□□□□□ -0.12
CLRN3-201ENST00000368671 PCGF6Q9BYE7 350 aa14.33□□□□□ -0.12
CLRN3-201ENST00000368671 MSL1Q68DK7 614 aa14.32□□□□□ -0.12
CLRN3-201ENST00000368671 NLGN2Q8NFZ4 835 aa14.32□□□□□ -0.12
CLRN3-201ENST00000368671 TIMELESSQ9UNS1 1208 aa14.32□□□□□ -0.12
CLRN3-201ENST00000368671 C4BP0C0L5 1744 aa14.31□□□□□ -0.12
CLRN3-201ENST00000368671 NCAPD2Q15021 1401 aa14.31□□□□□ -0.12
CLRN3-201ENST00000368671 SPG7Q9UQ90 795 aa14.3□□□□□ -0.12
CLRN3-201ENST00000368671 EYA1Q99502 592 aa14.29□□□□□ -0.12
CLRN3-201ENST00000368671 WASHC2AQ641Q2 1341 aa14.29□□□□□ -0.12
CLRN3-201ENST00000368671 TNNT2P45379 298 aaPredicted RBP14.28□□□□□ -0.12
CLRN3-201ENST00000368671 SMARCC1Q92922 1105 aaPredicted RBP14.28□□□□□ -0.12
CLRN3-201ENST00000368671 AK7Q96M32 723 aa14.28□□□□□ -0.12
CLRN3-201ENST00000368671 CLSPNQ9HAW4 1339 aa14.27□□□□□ -0.12
CLRN3-201ENST00000368671 FLAD1Q8NFF5 587 aa14.27□□□□□ -0.13
CLRN3-201ENST00000368671 PIGBQ92521 554 aa14.27□□□□□ -0.13
CLRN3-201ENST00000368671 POLKQ9UBT6 870 aa14.27□□□□□ -0.13
CLRN3-201ENST00000368671 FARP1Q9Y4F1 1045 aaPredicted RBP14.27□□□□□ -0.13
CLRN3-201ENST00000368671 UBR3Q6ZT12 1888 aa14.27□□□□□ -0.13
CLRN3-201ENST00000368671 PHF14O94880 888 aa14.26□□□□□ -0.13
CLRN3-201ENST00000368671 HMGB2P26583 209 aaKnown RBP14.26□□□□□ -0.13
CLRN3-201ENST00000368671 MNX1P50219 401 aaPredicted RBP14.26□□□□□ -0.13
CLRN3-201ENST00000368671 NKX1-1Q15270 411 aaPredicted RBP14.26□□□□□ -0.13
CLRN3-201ENST00000368671 EIF4A2Q14240 407 aaKnown RBP14.25□□□□□ -0.13
CLRN3-201ENST00000368671 SMIM5Q71RC9 77 aa14.25□□□□□ -0.13
CLRN3-201ENST00000368671 TMOD3Q9NYL9 352 aa14.25□□□□□ -0.13
CLRN3-201ENST00000368671 HSPA5P11021 654 aaKnown RBP14.24□□□□□ -0.13
CLRN3-201ENST00000368671 PHKG2P15735 406 aa14.24□□□□□ -0.13
CLRN3-201ENST00000368671 YBX3P16989 372 aaKnown RBP eCLIP14.24□□□□□ -0.13
CLRN3-201ENST00000368671 EIF4G2P78344 907 aaKnown RBP eCLIP14.24□□□□□ -0.13
CLRN3-201ENST00000368671 AMIGO3Q86WK7 504 aa14.24□□□□□ -0.13
CLRN3-201ENST00000368671 IFNL2Q8IZJ0 200 aa14.24□□□□□ -0.13
CLRN3-201ENST00000368671 LOC102724428A0A0B4J2F2 783 aa14.23□□□□□ -0.13
CLRN3-201ENST00000368671 SIK1P57059 783 aa14.23□□□□□ -0.13
CLRN3-201ENST00000368671 LINC00116Q8NCU8 138 aa14.23□□□□□ -0.13
CLRN3-201ENST00000368671 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLRN3-201ENST00000368671 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.22□□□□□ -0.13
CLRN3-201ENST00000368671 GRIN3BO60391 1043 aa14.22□□□□□ -0.13
CLRN3-201ENST00000368671 PANK3Q9H999 370 aa14.22□□□□□ -0.13
CLRN3-201ENST00000368671 ASAP1Q9ULH1 1129 aa14.22□□□□□ -0.13
CLRN3-201ENST00000368671 SENP3-EIF4A1A0A087X0R7 540 aa14.21□□□□□ -0.13
CLRN3-201ENST00000368671 ATP6V1AP38606 617 aa14.21□□□□□ -0.13
CLRN3-201ENST00000368671 VASPP50552 380 aaPredicted RBP14.21□□□□□ -0.13
CLRN3-201ENST00000368671 C1QTNF8P60827 252 aa14.21□□□□□ -0.13
CLRN3-201ENST00000368671 CD2APQ9Y5K6 639 aa14.21□□□□□ -0.13
CLRN3-201ENST00000368671 IGSF1Q8N6C5 1336 aa14.2□□□□□ -0.14
CLRN3-201ENST00000368671 SSFA2P28290 1259 aa14.2□□□□□ -0.14
CLRN3-201ENST00000368671 ITPK1Q13572 414 aa14.2□□□□□ -0.14
CLRN3-201ENST00000368671 MIER1Q8N108 512 aa14.2□□□□□ -0.14
CLRN3-201ENST00000368671 ATG3Q9NT62 314 aa14.2□□□□□ -0.14
CLRN3-201ENST00000368671 GNPATO15228 680 aa14.19□□□□□ -0.14
CLRN3-201ENST00000368671 GIGYF1O75420 1035 aaPredicted RBP14.19□□□□□ -0.14
CLRN3-201ENST00000368671 WWC3Q9ULE0 1092 aa14.19□□□□□ -0.14
CLRN3-201ENST00000368671 CCER1Q8TC90 406 aaPredicted RBP14.18□□□□□ -0.14
CLRN3-201ENST00000368671 PLEKHO1Q53GL0 409 aaPredicted RBP14.17□□□□□ -0.14
CLRN3-201ENST00000368671 MORC1Q86VD1 984 aa14.17□□□□□ -0.14
CLRN3-201ENST00000368671 PLCD3Q8N3E9 789 aa14.17□□□□□ -0.14
CLRN3-201ENST00000368671 COL5A3P25940 1745 aaPredicted RBP14.17□□□□□ -0.14
CLRN3-201ENST00000368671 PLEKHG2Q9H7P9 1386 aa14.17□□□□□ -0.14
CLRN3-201ENST00000368671 C19orf67A6NJJ6 358 aa14.16□□□□□ -0.14
CLRN3-201ENST00000368671 HSP90AB1P08238 724 aaKnown RBP14.16□□□□□ -0.14
CLRN3-201ENST00000368671 ZNF530Q6P9A1 599 aaPredicted RBP14.16□□□□□ -0.14
CLRN3-201ENST00000368671 KDRP35968 1356 aa14.16□□□□□ -0.14
CLRN3-201ENST00000368671 ZNF831Q5JPB2 1677 aa14.16□□□□□ -0.14
CLRN3-201ENST00000368671 KDM6AO15550 1401 aaPredicted RBP14.15□□□□□ -0.14
CLRN3-201ENST00000368671 ERVV-2B6SEH9 535 aa14.15□□□□□ -0.14
CLRN3-201ENST00000368671 AEBP1Q8IUX7 1158 aa14.15□□□□□ -0.14
CLRN3-201ENST00000368671 DCAF5Q96JK2 942 aa14.15□□□□□ -0.14
CLRN3-201ENST00000368671 ATP10DQ9P241 1426 aa14.15□□□□□ -0.14
CLRN3-201ENST00000368671 CABP4P57796 275 aa14.14□□□□□ -0.15
CLRN3-201ENST00000368671 SLC4A9Q96Q91 983 aa14.14□□□□□ -0.15
CLRN3-201ENST00000368671 RTCBQ9Y3I0 505 aaKnown RBP14.14□□□□□ -0.15
CLRN3-201ENST00000368671 CICQ96RK0 1608 aaPredicted RBP14.13□□□□□ -0.15
CLRN3-201ENST00000368671 HAX1O00165 279 aa14.13□□□□□ -0.15
CLRN3-201ENST00000368671 MMP10P09238 476 aa14.13□□□□□ -0.15
CLRN3-201ENST00000368671 AMOTQ4VCS5 1084 aa14.13□□□□□ -0.15
CLRN3-201ENST00000368671 C1orf141Q5JVX7 400 aa14.13□□□□□ -0.15
CLRN3-201ENST00000368671 KNSTRNQ9Y448 316 aa14.13□□□□□ -0.15
CLRN3-201ENST00000368671 C4AP0C0L4 1744 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 UTRNP46939 3433 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 N4BP2Q86UW6 1770 aaPredicted RBP14.12□□□□□ -0.15
CLRN3-201ENST00000368671 MTHFSP49914 203 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 TRAPPC3LQ5T215 181 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 SULT6B1Q6IMI4 303 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 KIF13BQ9NQT8 1826 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 KIAA1551Q9HCM1 1747 aa14.12□□□□□ -0.15
CLRN3-201ENST00000368671 ZNF526Q8TF50 670 aaPredicted RBP14.11□□□□□ -0.15
CLRN3-201ENST00000368671 SCN11AQ9UI33 1791 aa14.11□□□□□ -0.15
CLRN3-201ENST00000368671 CNTNAP4Q9C0A0 1308 aa14.11□□□□□ -0.15
CLRN3-201ENST00000368671 TJP1Q07157 1748 aa14.1□□□□□ -0.15
CLRN3-201ENST00000368671 PTCD1O75127 700 aaKnown RBP14.1□□□□□ -0.15
CLRN3-201ENST00000368671 ARHGEF1Q92888 912 aaKnown RBP14.1□□□□□ -0.15
CLRN3-201ENST00000368671 ADCY9O60503 1353 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 VIRMAQ69YN4 1812 aaKnown RBP14.09□□□□□ -0.15
CLRN3-201ENST00000368671 RPS6KA4O75676 772 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 IL13P35225 146 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 RFC4P35249 363 aa14.09□□□□□ -0.15
CLRN3-201ENST00000368671 RC3H1Q5TC82 1133 aaKnown RBP14.09□□□□□ -0.15
CLRN3-201ENST00000368671 NLGN1Q8N2Q7 840 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms