RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 IVNS1ABPQ9Y6Y0 642 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 KDM4AO75164 1064 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 CHMP5Q9NZZ3 219 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 ABCC5O15440 1437 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 SCAPERQ9BY12 1400 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 HLA-DOAP06340 250 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 TAF12Q16514 161 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 LRCH2Q5VUJ6 765 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 KRT28Q7Z3Y7 464 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 PPP1R42Q7Z4L9 355 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 APBA3O96018 575 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 KRT18P05783 430 aaKnown RBP10.15□□□□□ -0.78
SYNE1-206ENST00000367253 LIG1P18858 919 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 INCENPQ9NQS7 918 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 SYCP1Q15431 976 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 SKIDA1Q1XH10 827 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 EP400NLQ6ZTU2 488 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.15□□□□□ -0.78
SYNE1-206ENST00000367253 GOLGA6L7A0A1B0GV03 622 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 EPS15P42566 896 aa10.15□□□□□ -0.78
SYNE1-206ENST00000367253 UTP14AQ9BVJ6 771 aaKnown RBP10.15□□□□□ -0.78
SYNE1-206ENST00000367253 NCBP1Q09161 790 aaKnown RBP10.15□□□□□ -0.79
SYNE1-206ENST00000367253 FAM135AQ9P2D6 1515 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 KIAA0754O94854 1291 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 BIRC2Q13490 618 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 SEPT14Q6ZU15 432 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 CUL5Q93034 780 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 CDK19Q9BWU1 502 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 GPHNQ9NQX3 736 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-206ENST00000367253 IFIT1P09914 478 aaKnown RBP10.14□□□□□ -0.79
SYNE1-206ENST00000367253 USP21Q9UK80 565 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 RTCBQ9Y3I0 505 aaKnown RBP10.14□□□□□ -0.79
SYNE1-206ENST00000367253 UHRF1BP1Q6BDS2 1440 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 GNAI1P63096 354 aa10.14□□□□□ -0.79
SYNE1-206ENST00000367253 CDC5LQ99459 802 aaKnown RBP10.14□□□□□ -0.79
SYNE1-206ENST00000367253 NCOA1Q15788 1441 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 MATR3P43243 847 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE1-206ENST00000367253 MNAT1P51948 309 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 AMOTQ4VCS5 1084 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 CCDC30Q5VVM6 783 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 GIGYF2Q6Y7W6 1299 aaKnown RBP10.13□□□□□ -0.79
SYNE1-206ENST00000367253 EAPPQ56P03 285 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-206ENST00000367253 TMEM106CQ9BVX2 250 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 LRRFIP2Q9Y608 721 aaKnown RBP10.13□□□□□ -0.79
SYNE1-206ENST00000367253 HSPA2P54652 639 aa10.13□□□□□ -0.79
SYNE1-206ENST00000367253 PLCH2O75038 1416 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 TCOF1Q13428 1488 aaKnown RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 H7C1D1 291 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 MAP2K2P36507 400 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 TRIM22Q8IYM9 498 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 NYXQ9GZU5 481 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 CENPHQ9H3R5 247 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 ITSN2Q9NZM3 1697 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 CCDC174Q6PII3 467 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 PCMTD1Q96MG8 357 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 OFD1O75665 1012 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 TTC39AQ5SRH9 613 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 NBPF6Q5VWK0 638 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 NBPF5PQ86XG9 351 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 NBPF4Q96M43 638 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 TCHPQ9BT92 498 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 MTMR7Q9Y216 660 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 KIAA1107Q9UPP5 1409 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 TXLNAP40222 546 aa10.12□□□□□ -0.79
SYNE1-206ENST00000367253 NASPP49321 788 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 SPTY2D1Q68D10 685 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 ZMAT2Q96NC0 199 aaKnown RBP10.12□□□□□ -0.79
SYNE1-206ENST00000367253 GRIN3BO60391 1043 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 LETM1O95202 739 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-206ENST00000367253 CENPQQ7L2Z9 268 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-206ENST00000367253 CCDC173Q0VFZ6 552 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 APBB1IPQ7Z5R6 666 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-206ENST00000367253 SETDB2Q96T68 719 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 GJA3Q9Y6H8 435 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 NBPF3Q9H094 633 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 C19orf44Q9H6X5 657 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-206ENST00000367253 ARHGAP27Q6ZUM4 889 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 RAI14Q9P0K7 980 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 WDR7Q9Y4E6 1490 aa10.11□□□□□ -0.79
SYNE1-206ENST00000367253 PABPN1LA6NDY0 278 aaKnown RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 UQCRHP07919 91 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 MPRIPQ6WCQ1 1025 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 RNF168Q8IYW5 571 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 ZNF513Q8N8E2 541 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 POLR3DP05423 398 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 CTR9Q6PD62 1173 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 ABT1Q9ULW3 272 aaKnown RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 ASXL2Q76L83 1435 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 UQCRHLA0A096LP55 91 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 FAM200AQ8TCP9 573 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 MTIF3Q9H2K0 278 aaKnown RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 SWAP70Q9UH65 585 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 FOXO3O43524 673 aa10.1□□□□□ -0.79
SYNE1-206ENST00000367253 CT47B1P0C2W7 299 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 XPCQ01831 940 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 BMP2KQ9NSY1 1161 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-206ENST00000367253 UHRF1BP1LA0JNW5 1464 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 RTEL1-TNFRSF6BF6WH68 1400 aa10.09□□□□□ -0.79
SYNE1-206ENST00000367253 PABPC4Q13310 644 aaKnown RBP eCLIP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms