RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SMIM5Q71RC9 77 aa19.24■□□□□ 0.67
VPS29-201ENST00000360579 IFNL2Q8IZJ0 200 aa19.24■□□□□ 0.67
VPS29-201ENST00000360579 WASHC2AQ641Q2 1341 aa19.24■□□□□ 0.67
VPS29-201ENST00000360579 CICQ96RK0 1608 aaPredicted RBP19.23■□□□□ 0.67
VPS29-201ENST00000360579 KIF3CO14782 793 aa19.23■□□□□ 0.67
VPS29-201ENST00000360579 MMP10P09238 476 aa19.23■□□□□ 0.67
VPS29-201ENST00000360579 TGFB2P61812 414 aa19.23■□□□□ 0.67
VPS29-201ENST00000360579 ITPK1Q13572 414 aa19.22■□□□□ 0.67
VPS29-201ENST00000360579 ASAP1Q9ULH1 1129 aa19.22■□□□□ 0.67
VPS29-201ENST00000360579 MAP2P11137 1827 aaKnown RBP19.22■□□□□ 0.67
VPS29-201ENST00000360579 PLEKHG2Q9H7P9 1386 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 PHKG2P15735 406 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 APLP1P51693 650 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 CACNB1Q02641 598 aaPredicted RBP19.21■□□□□ 0.67
VPS29-201ENST00000360579 NLGN1Q8N2Q7 840 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 EYA1Q99502 592 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 CARD14Q9BXL6 1004 aa19.21■□□□□ 0.67
VPS29-201ENST00000360579 TRAPPC3LQ5T215 181 aa19.2■□□□□ 0.66
VPS29-201ENST00000360579 RTCBQ9Y3I0 505 aaKnown RBP19.2■□□□□ 0.66
VPS29-201ENST00000360579 ATG3Q9NT62 314 aa19.19■□□□□ 0.66
VPS29-201ENST00000360579 PXDNLA1KZ92 1463 aa19.19■□□□□ 0.66
VPS29-201ENST00000360579 TOMM70O94826 608 aa19.18■□□□□ 0.66
VPS29-201ENST00000360579 BCS1LQ9Y276 419 aa19.18■□□□□ 0.66
VPS29-201ENST00000360579 ANKRD26Q9UPS8 1709 aa19.17■□□□□ 0.66
VPS29-201ENST00000360579 CCDC87Q9NVE4 849 aa19.17■□□□□ 0.66
VPS29-201ENST00000360579 ERVV-2B6SEH9 535 aa19.16■□□□□ 0.66
VPS29-201ENST00000360579 HSP90AB1P08238 724 aaKnown RBP19.16■□□□□ 0.66
VPS29-201ENST00000360579 RC3H1Q5TC82 1133 aaKnown RBP19.16■□□□□ 0.66
VPS29-201ENST00000360579 KDRP35968 1356 aa19.16■□□□□ 0.66
VPS29-201ENST00000360579 C10orf71Q711Q0 1435 aa19.16■□□□□ 0.66
VPS29-201ENST00000360579 A0A0G2JLW4 131 aa19.15■□□□□ 0.66
VPS29-201ENST00000360579 POLKQ9UBT6 870 aa19.15■□□□□ 0.66
VPS29-201ENST00000360579 KIF13BQ9NQT8 1826 aa19.14■□□□□ 0.65
VPS29-201ENST00000360579 ARHGAP27Q6ZUM4 889 aa19.14■□□□□ 0.65
VPS29-201ENST00000360579 RFC4P35249 363 aa19.13■□□□□ 0.65
VPS29-201ENST00000360579 ARHGEF1Q92888 912 aaKnown RBP19.13■□□□□ 0.65
VPS29-201ENST00000360579 DCAF5Q96JK2 942 aa19.13■□□□□ 0.65
VPS29-201ENST00000360579 RBM42Q9BTD8 480 aaKnown RBP19.13■□□□□ 0.65
VPS29-201ENST00000360579 PARP3Q9Y6F1 533 aa19.13■□□□□ 0.65
VPS29-201ENST00000360579 CNTNAP4Q9C0A0 1308 aa19.13■□□□□ 0.65
VPS29-201ENST00000360579 ZNF831Q5JPB2 1677 aa19.12■□□□□ 0.65
VPS29-201ENST00000360579 FCHSD2O94868 740 aa19.12■□□□□ 0.65
VPS29-201ENST00000360579 EIF4A2Q14240 407 aaKnown RBP19.12■□□□□ 0.65
VPS29-201ENST00000360579 RPS6KA4O75676 772 aa19.11■□□□□ 0.65
VPS29-201ENST00000360579 GYS1P13807 737 aa19.11■□□□□ 0.65
VPS29-201ENST00000360579 DPEP1P16444 411 aa19.11■□□□□ 0.65
VPS29-201ENST00000360579 SLC4A9Q96Q91 983 aa19.1■□□□□ 0.65
VPS29-201ENST00000360579 KIAA1551Q9HCM1 1747 aa19.1■□□□□ 0.65
VPS29-201ENST00000360579 C4AP0C0L4 1744 aa19.09■□□□□ 0.65
VPS29-201ENST00000360579 PLEKHO1Q53GL0 409 aaPredicted RBP19.09■□□□□ 0.65
VPS29-201ENST00000360579 C16orf71Q8IYS4 520 aaPredicted RBP19.09■□□□□ 0.65
VPS29-201ENST00000360579 DNAJC5GQ8N7S2 189 aa19.09■□□□□ 0.65
VPS29-201ENST00000360579 RBM46Q8TBY0 533 aaKnown RBP19.09■□□□□ 0.65
VPS29-201ENST00000360579 NMRK2Q9NPI5 230 aa19.09■□□□□ 0.65
VPS29-201ENST00000360579 CABP4P57796 275 aa19.08■□□□□ 0.64
VPS29-201ENST00000360579 C1QBPQ07021 282 aaKnown RBP19.08■□□□□ 0.64
VPS29-201ENST00000360579 AMOTQ4VCS5 1084 aa19.08■□□□□ 0.64
VPS29-201ENST00000360579 PIM2Q9P1W9 311 aa19.08■□□□□ 0.64
VPS29-201ENST00000360579 N4BP2Q86UW6 1770 aaPredicted RBP19.08■□□□□ 0.64
VPS29-201ENST00000360579 C9orf131Q5VYM1 1079 aa19.07■□□□□ 0.64
VPS29-201ENST00000360579 KDM2BQ8NHM5 1336 aa19.05■□□□□ 0.64
VPS29-201ENST00000360579 TNNT2P45379 298 aaPredicted RBP19.05■□□□□ 0.64
VPS29-201ENST00000360579 FSTL1Q12841 308 aa19.05■□□□□ 0.64
VPS29-201ENST00000360579 DALRD3Q5D0E6 543 aaKnown RBP19.05■□□□□ 0.64
VPS29-201ENST00000360579 ZNF530Q6P9A1 599 aaPredicted RBP19.05■□□□□ 0.64
VPS29-201ENST00000360579 COL5A3P25940 1745 aaPredicted RBP19.05■□□□□ 0.64
VPS29-201ENST00000360579 KCNA3P22001 575 aa19.04■□□□□ 0.64
VPS29-201ENST00000360579 KDM6AO15550 1401 aaPredicted RBP19.03■□□□□ 0.64
VPS29-201ENST00000360579 MTHFSP49914 203 aa19.03■□□□□ 0.64
VPS29-201ENST00000360579 C1orf141Q5JVX7 400 aa19.03■□□□□ 0.64
VPS29-201ENST00000360579 USP42Q9H9J4 1324 aaKnown RBP19.02■□□□□ 0.64
VPS29-201ENST00000360579 PTCD1O75127 700 aaKnown RBP19.02■□□□□ 0.64
VPS29-201ENST00000360579 CRKLP46109 303 aaKnown RBP19.02■□□□□ 0.64
VPS29-201ENST00000360579 TIMELESSQ9UNS1 1208 aa19.02■□□□□ 0.64
VPS29-201ENST00000360579 BRCA1P38398 1863 aaKnown RBP19.01■□□□□ 0.63
VPS29-201ENST00000360579 KLRG1Q96E93 195 aa19.01■□□□□ 0.63
VPS29-201ENST00000360579 RNF181Q9P0P0 153 aa19.01■□□□□ 0.63
VPS29-201ENST00000360579 ARFGEF1Q9Y6D6 1849 aa19■□□□□ 0.63
VPS29-201ENST00000360579 FKBP8Q14318 412 aa19■□□□□ 0.63
VPS29-201ENST00000360579 POLR3GLQ9BT43 218 aa19■□□□□ 0.63
VPS29-201ENST00000360579 WDR90Q96KV7 1748 aa19■□□□□ 0.63
VPS29-201ENST00000360579 DDR1Q08345 913 aa18.99■□□□□ 0.63
VPS29-201ENST00000360579 JMYQ8N9B5 988 aa18.99■□□□□ 0.63
VPS29-201ENST00000360579 NFATC2IPQ8NCF5 419 aa18.99■□□□□ 0.63
VPS29-201ENST00000360579 SRP68Q9UHB9 627 aaKnown RBP18.99■□□□□ 0.63
VPS29-201ENST00000360579 ZC3H4Q9UPT8 1303 aaKnown RBP18.99■□□□□ 0.63
VPS29-201ENST00000360579 KCPQ6ZWJ8 1503 aa18.98■□□□□ 0.63
VPS29-201ENST00000360579 ZPR1O75312 459 aa18.97■□□□□ 0.63
VPS29-201ENST00000360579 MYH14Q7Z406 1995 aaKnown RBP18.97■□□□□ 0.63
VPS29-201ENST00000360579 POLRMTO00411 1230 aaKnown RBP18.96■□□□□ 0.63
VPS29-201ENST00000360579 SMC1BQ8NDV3 1235 aa18.96■□□□□ 0.63
VPS29-201ENST00000360579 RRAGCQ9HB90 399 aa18.96■□□□□ 0.63
VPS29-201ENST00000360579 TM4SF1P30408 202 aa18.95■□□□□ 0.62
VPS29-201ENST00000360579 CHRNA5P30532 468 aa18.95■□□□□ 0.62
VPS29-201ENST00000360579 INTS5Q6P9B9 1019 aaKnown RBP18.95■□□□□ 0.62
VPS29-201ENST00000360579 AEBP1Q8IUX7 1158 aa18.95■□□□□ 0.62
VPS29-201ENST00000360579 SULT6B1Q6IMI4 303 aa18.94■□□□□ 0.62
VPS29-201ENST00000360579 PCNTO95613 3336 aa18.93■□□□□ 0.62
VPS29-201ENST00000360579 TNRC6CQ9HCJ0 1690 aaKnown RBP18.93■□□□□ 0.62
VPS29-201ENST00000360579 HTRA3P83110 453 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms