RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 THRAP3Q9Y2W1 955 aaKnown RBP23.95■■□□□ 1.42
CLN3-206ENST00000360019 BTBD11A6QL63 1104 aa23.94■■□□□ 1.42
CLN3-206ENST00000360019 DDX54Q8TDD1 881 aaKnown RBP23.94■■□□□ 1.42
CLN3-206ENST00000360019 NKX1-1Q15270 411 aaPredicted RBP23.94■■□□□ 1.42
CLN3-206ENST00000360019 FRAT1Q92837 279 aaPredicted RBP23.93■■□□□ 1.42
CLN3-206ENST00000360019 KCNQ3O43525 872 aa23.92■■□□□ 1.42
CLN3-206ENST00000360019 VPS72Q15906 364 aa23.91■■□□□ 1.42
CLN3-206ENST00000360019 CCDC9Q9Y3X0 531 aaKnown RBP23.91■■□□□ 1.42
CLN3-206ENST00000360019 MEX3CQ5U5Q3 659 aaKnown RBP23.91■■□□□ 1.42
CLN3-206ENST00000360019 NFATC2IPQ8NCF5 419 aa23.91■■□□□ 1.42
CLN3-206ENST00000360019 CDCA7Q9BWT1 371 aaPredicted RBP23.91■■□□□ 1.42
CLN3-206ENST00000360019 TNS2Q63HR2 1409 aa23.9■■□□□ 1.42
CLN3-206ENST00000360019 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.9■■□□□ 1.42
CLN3-206ENST00000360019 CANXP27824 592 aaKnown RBP23.9■■□□□ 1.42
CLN3-206ENST00000360019 EIF4A1P60842 406 aaKnown RBP23.9■■□□□ 1.42
CLN3-206ENST00000360019 USP21Q9UK80 565 aa23.9■■□□□ 1.42
CLN3-206ENST00000360019 TCERG1O14776 1098 aaKnown RBP23.89■■□□□ 1.42
CLN3-206ENST00000360019 BRPF1P55201 1214 aaPredicted RBP23.89■■□□□ 1.42
CLN3-206ENST00000360019 BARGINQ6ZT62 677 aa23.89■■□□□ 1.42
CLN3-206ENST00000360019 MRPL50Q8N5N7 158 aaKnown RBP23.89■■□□□ 1.42
CLN3-206ENST00000360019 EXOC6Q8TAG9 804 aa23.89■■□□□ 1.41
CLN3-206ENST00000360019 EXOC5O00471 708 aa23.88■■□□□ 1.41
CLN3-206ENST00000360019 CRBNQ96SW2 442 aa23.88■■□□□ 1.41
CLN3-206ENST00000360019 TNNQ9UQP3 1299 aa23.88■■□□□ 1.41
CLN3-206ENST00000360019 TOGARAM1Q9Y4F4 1720 aa23.87■■□□□ 1.41
CLN3-206ENST00000360019 KIF16BQ96L93 1317 aa23.87■■□□□ 1.41
CLN3-206ENST00000360019 CABP4P57796 275 aa23.87■■□□□ 1.41
CLN3-206ENST00000360019 PDE3AQ14432 1141 aa23.87■■□□□ 1.41
CLN3-206ENST00000360019 NOB1Q9ULX3 412 aaKnown RBP23.87■■□□□ 1.41
CLN3-206ENST00000360019 SOS1Q07889 1333 aaPredicted RBP23.86■■□□□ 1.41
CLN3-206ENST00000360019 ERVV-2B6SEH9 535 aa23.86■■□□□ 1.41
CLN3-206ENST00000360019 ZKSCAN2Q63HK3 967 aa23.86■■□□□ 1.41
CLN3-206ENST00000360019 AFF2P51816 1311 aa23.85■■□□□ 1.41
CLN3-206ENST00000360019 HEG1Q9ULI3 1381 aa23.85■■□□□ 1.41
CLN3-206ENST00000360019 SLC39A6Q13433 755 aa23.84■■□□□ 1.41
CLN3-206ENST00000360019 ZNF790Q6PG37 636 aa23.84■■□□□ 1.41
CLN3-206ENST00000360019 DDB1Q16531 1140 aa23.84■■□□□ 1.41
CLN3-206ENST00000360019 PANK1Q8TE04 598 aa23.84■■□□□ 1.41
CLN3-206ENST00000360019 RLBP1P12271 317 aa23.83■■□□□ 1.41
CLN3-206ENST00000360019 TRIM27P14373 513 aa23.83■■□□□ 1.41
CLN3-206ENST00000360019 FAM98CQ17RN3 349 aaKnown RBP23.82■■□□□ 1.4
CLN3-206ENST00000360019 ATF7IPQ6VMQ6 1270 aa23.82■■□□□ 1.4
CLN3-206ENST00000360019 PPP4R2Q9NY27 417 aa23.82■■□□□ 1.4
CLN3-206ENST00000360019 CLUAP1Q96AJ1 413 aa23.82■■□□□ 1.4
CLN3-206ENST00000360019 HOXB7P09629 217 aa23.81■■□□□ 1.4
CLN3-206ENST00000360019 IPO8O15397 1037 aaKnown RBP23.8■■□□□ 1.4
CLN3-206ENST00000360019 GIGYF1O75420 1035 aaPredicted RBP23.8■■□□□ 1.4
CLN3-206ENST00000360019 NECTIN2Q92692 538 aa23.79■■□□□ 1.4
CLN3-206ENST00000360019 GLI3P10071 1580 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 SLC4A2P04920 1241 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 HDGFL1Q5TGJ6 251 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 CCDC30Q5VVM6 783 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 DZIP1LQ8IYY4 767 aaKnown RBP23.78■■□□□ 1.4
CLN3-206ENST00000360019 ARHGAP45Q92619 1136 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 COG6Q9Y2V7 657 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 ATRNO75882 1429 aa23.78■■□□□ 1.4
CLN3-206ENST00000360019 ZNF496Q96IT1 587 aaPredicted RBP23.77■■□□□ 1.4
CLN3-206ENST00000360019 PAPPAQ13219 1627 aa23.77■■□□□ 1.4
CLN3-206ENST00000360019 PRAMEF22A3QJZ6 481 aa23.77■■□□□ 1.4
CLN3-206ENST00000360019 FTSJ3Q8IY81 847 aaKnown RBP23.77■■□□□ 1.4
CLN3-206ENST00000360019 TTC5Q8N0Z6 440 aa23.77■■□□□ 1.4
CLN3-206ENST00000360019 MARCH10Q8NA82 808 aaPredicted RBP23.77■■□□□ 1.4
CLN3-206ENST00000360019 GJD4Q96KN9 370 aaPredicted RBP23.76■■□□□ 1.39
CLN3-206ENST00000360019 THSD7AQ9UPZ6 1657 aa23.76■■□□□ 1.39
CLN3-206ENST00000360019 MS4A1P11836 297 aa23.75■■□□□ 1.39
CLN3-206ENST00000360019 EIF2S2P20042 333 aaKnown RBP23.75■■□□□ 1.39
CLN3-206ENST00000360019 STK31Q9BXU1 1019 aa23.75■■□□□ 1.39
CLN3-206ENST00000360019 TMOD3Q9NYL9 352 aa23.75■■□□□ 1.39
CLN3-206ENST00000360019 TRPC5Q9UL62 973 aaPredicted RBP23.75■■□□□ 1.39
CLN3-206ENST00000360019 ITGB4P16144 1822 aa23.75■■□□□ 1.39
CLN3-206ENST00000360019 B4GALNT3Q6L9W6 998 aa23.74■■□□□ 1.39
CLN3-206ENST00000360019 G2E3Q7L622 706 aa23.74■■□□□ 1.39
CLN3-206ENST00000360019 C5P01031 1676 aa23.74■■□□□ 1.39
CLN3-206ENST00000360019 UBR2Q8IWV8 1755 aa23.74■■□□□ 1.39
CLN3-206ENST00000360019 PIGBQ92521 554 aa23.73■■□□□ 1.39
CLN3-206ENST00000360019 RGS12O14924 1447 aa23.73■■□□□ 1.39
CLN3-206ENST00000360019 DOT1LQ8TEK3 1739 aa23.73■■□□□ 1.39
CLN3-206ENST00000360019 KCPQ6ZWJ8 1503 aa23.73■■□□□ 1.39
CLN3-206ENST00000360019 FMNL2Q96PY5 1086 aa23.73■■□□□ 1.39
CLN3-206ENST00000360019 BCL9O00512 1426 aa23.72■■□□□ 1.39
CLN3-206ENST00000360019 MVPQ14764 893 aaKnown RBP23.72■■□□□ 1.39
CLN3-206ENST00000360019 TMEM57Q8N5G2 664 aa23.72■■□□□ 1.39
CLN3-206ENST00000360019 API5Q9BZZ5 524 aaKnown RBP23.72■■□□□ 1.39
CLN3-206ENST00000360019 ABCC4O15439 1325 aa23.72■■□□□ 1.39
CLN3-206ENST00000360019 PTPRCP08575 1304 aa23.72■■□□□ 1.39
CLN3-206ENST00000360019 CACNA1FO60840 1977 aa23.71■■□□□ 1.39
CLN3-206ENST00000360019 CHMP4AQ9BY43 222 aa23.7■■□□□ 1.39
CLN3-206ENST00000360019 CHPF2Q9P2E5 772 aa23.7■■□□□ 1.39
CLN3-206ENST00000360019 A0A0G2JS52 829 aa23.7■■□□□ 1.38
CLN3-206ENST00000360019 SNRPA1P09661 255 aaKnown RBP23.7■■□□□ 1.38
CLN3-206ENST00000360019 MYT1Q01538 1121 aa23.7■■□□□ 1.38
CLN3-206ENST00000360019 FBXO41Q8TF61 875 aa23.69■■□□□ 1.38
CLN3-206ENST00000360019 PRIM1P49642 420 aaKnown RBP23.68■■□□□ 1.38
CLN3-206ENST00000360019 FLIIQ13045 1269 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 QTRT2Q9H974 415 aaKnown RBP23.68■■□□□ 1.38
CLN3-206ENST00000360019 ASAP1Q9ULH1 1129 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 KAT6BQ8WYB5 2073 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 ONECUT3O60422 494 aaPredicted RBP23.68■■□□□ 1.38
CLN3-206ENST00000360019 ITPRIPQ8IWB1 547 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 SYTL4Q96C24 671 aaPredicted RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms