RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 MRC1P22897 1456 aa23.96■■□□□ 1.43
CLN3-204ENST00000357857 LRP6O75581 1613 aa23.96■■□□□ 1.43
CLN3-204ENST00000357857 ZKSCAN2Q63HK3 967 aa23.96■■□□□ 1.43
CLN3-204ENST00000357857 MRPL50Q8N5N7 158 aaKnown RBP23.95■■□□□ 1.42
CLN3-204ENST00000357857 C8orf37Q96NL8 207 aa23.94■■□□□ 1.42
CLN3-204ENST00000357857 SLC52A2Q9HAB3 445 aa23.94■■□□□ 1.42
CLN3-204ENST00000357857 SPATA31A1Q5TZJ5 1347 aa23.94■■□□□ 1.42
CLN3-204ENST00000357857 SOS1Q07889 1333 aaPredicted RBP23.93■■□□□ 1.42
CLN3-204ENST00000357857 NGLY1Q96IV0 654 aa23.93■■□□□ 1.42
CLN3-204ENST00000357857 NOB1Q9ULX3 412 aaKnown RBP23.93■■□□□ 1.42
CLN3-204ENST00000357857 THRAP3Q9Y2W1 955 aaKnown RBP23.93■■□□□ 1.42
CLN3-204ENST00000357857 IPO8O15397 1037 aaKnown RBP23.92■■□□□ 1.42
CLN3-204ENST00000357857 DDX54Q8TDD1 881 aaKnown RBP23.92■■□□□ 1.42
CLN3-204ENST00000357857 SPATA31A5Q5VU36 1347 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 SPATA31A7Q8IWB4 1347 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 TCERG1O14776 1098 aaKnown RBP23.91■■□□□ 1.42
CLN3-204ENST00000357857 MS4A1P11836 297 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 EIF4A1P60842 406 aaKnown RBP23.91■■□□□ 1.42
CLN3-204ENST00000357857 NKX1-1Q15270 411 aaPredicted RBP23.91■■□□□ 1.42
CLN3-204ENST00000357857 UNC5CLQ8IV45 518 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 PANK1Q8TE04 598 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 CACNA1FO60840 1977 aa23.91■■□□□ 1.42
CLN3-204ENST00000357857 CDCA7Q9BWT1 371 aaPredicted RBP23.9■■□□□ 1.42
CLN3-204ENST00000357857 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.9■■□□□ 1.42
CLN3-204ENST00000357857 KCNQ3O43525 872 aa23.9■■□□□ 1.42
CLN3-204ENST00000357857 ATF7IPQ6VMQ6 1270 aa23.9■■□□□ 1.42
CLN3-204ENST00000357857 TNNQ9UQP3 1299 aa23.9■■□□□ 1.42
CLN3-204ENST00000357857 NFATC2IPQ8NCF5 419 aa23.89■■□□□ 1.41
CLN3-204ENST00000357857 BCL9LQ86UU0 1499 aa23.88■■□□□ 1.41
CLN3-204ENST00000357857 TRIM27P14373 513 aa23.88■■□□□ 1.41
CLN3-204ENST00000357857 CABP4P57796 275 aa23.88■■□□□ 1.41
CLN3-204ENST00000357857 DZIP1LQ8IYY4 767 aaKnown RBP23.88■■□□□ 1.41
CLN3-204ENST00000357857 FNBP4Q8N3X1 1017 aaPredicted RBP23.88■■□□□ 1.41
CLN3-204ENST00000357857 CCDC9Q9Y3X0 531 aaKnown RBP23.88■■□□□ 1.41
CLN3-204ENST00000357857 FTSJ3Q8IY81 847 aaKnown RBP23.87■■□□□ 1.41
CLN3-204ENST00000357857 CLUAP1Q96AJ1 413 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 TOGARAM1Q9Y4F4 1720 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 TNS2Q63HR2 1409 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 RLBP1P12271 317 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 B4GALNT3Q6L9W6 998 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 ARHGAP45Q92619 1136 aa23.87■■□□□ 1.41
CLN3-204ENST00000357857 ERVV-2B6SEH9 535 aa23.86■■□□□ 1.41
CLN3-204ENST00000357857 EXOC5O00471 708 aa23.86■■□□□ 1.41
CLN3-204ENST00000357857 HOXB7P09629 217 aa23.86■■□□□ 1.41
CLN3-204ENST00000357857 MEX3CQ5U5Q3 659 aaKnown RBP23.86■■□□□ 1.41
CLN3-204ENST00000357857 COG6Q9Y2V7 657 aa23.86■■□□□ 1.41
CLN3-204ENST00000357857 CCDC30Q5VVM6 783 aa23.85■■□□□ 1.41
CLN3-204ENST00000357857 VPS72Q15906 364 aa23.84■■□□□ 1.41
CLN3-204ENST00000357857 BARGINQ6ZT62 677 aa23.84■■□□□ 1.41
CLN3-204ENST00000357857 CCDC136Q96JN2 1154 aa23.84■■□□□ 1.41
CLN3-204ENST00000357857 ZNF790Q6PG37 636 aa23.84■■□□□ 1.41
CLN3-204ENST00000357857 HEG1Q9ULI3 1381 aa23.83■■□□□ 1.41
CLN3-204ENST00000357857 STK31Q9BXU1 1019 aa23.83■■□□□ 1.41
CLN3-204ENST00000357857 SLC39A6Q13433 755 aa23.82■■□□□ 1.4
CLN3-204ENST00000357857 CHMP4AQ9BY43 222 aa23.82■■□□□ 1.4
CLN3-204ENST00000357857 USP21Q9UK80 565 aa23.82■■□□□ 1.4
CLN3-204ENST00000357857 ITGB4P16144 1822 aa23.82■■□□□ 1.4
CLN3-204ENST00000357857 SLC4A2P04920 1241 aa23.81■■□□□ 1.4
CLN3-204ENST00000357857 HDGFL1Q5TGJ6 251 aa23.81■■□□□ 1.4
CLN3-204ENST00000357857 PAPPAQ13219 1627 aa23.81■■□□□ 1.4
CLN3-204ENST00000357857 MVPQ14764 893 aaKnown RBP23.81■■□□□ 1.4
CLN3-204ENST00000357857 API5Q9BZZ5 524 aaKnown RBP23.81■■□□□ 1.4
CLN3-204ENST00000357857 DDB1Q16531 1140 aa23.8■■□□□ 1.4
CLN3-204ENST00000357857 TTC5Q8N0Z6 440 aa23.8■■□□□ 1.4
CLN3-204ENST00000357857 NECTIN2Q92692 538 aa23.8■■□□□ 1.4
CLN3-204ENST00000357857 C5P01031 1676 aa23.79■■□□□ 1.4
CLN3-204ENST00000357857 GIGYF1O75420 1035 aaPredicted RBP23.79■■□□□ 1.4
CLN3-204ENST00000357857 PTPRCP08575 1304 aa23.79■■□□□ 1.4
CLN3-204ENST00000357857 UBR2Q8IWV8 1755 aa23.79■■□□□ 1.4
CLN3-204ENST00000357857 EIF2S2P20042 333 aaKnown RBP23.78■■□□□ 1.4
CLN3-204ENST00000357857 TMEM57Q8N5G2 664 aa23.78■■□□□ 1.4
CLN3-204ENST00000357857 KAT6BQ8WYB5 2073 aa23.77■■□□□ 1.4
CLN3-204ENST00000357857 ABCC4O15439 1325 aa23.77■■□□□ 1.4
CLN3-204ENST00000357857 AAMPQ13685 434 aa23.76■■□□□ 1.39
CLN3-204ENST00000357857 ITPRIPQ8IWB1 547 aa23.76■■□□□ 1.39
CLN3-204ENST00000357857 ZNF496Q96IT1 587 aaPredicted RBP23.76■■□□□ 1.39
CLN3-204ENST00000357857 TMOD3Q9NYL9 352 aa23.76■■□□□ 1.39
CLN3-204ENST00000357857 DDX19BQ9UMR2 479 aa23.76■■□□□ 1.39
CLN3-204ENST00000357857 AFF2P51816 1311 aa23.76■■□□□ 1.39
CLN3-204ENST00000357857 DOT1LQ8TEK3 1739 aa23.75■■□□□ 1.39
CLN3-204ENST00000357857 RGS12O14924 1447 aa23.75■■□□□ 1.39
CLN3-204ENST00000357857 FAM98CQ17RN3 349 aaKnown RBP23.75■■□□□ 1.39
CLN3-204ENST00000357857 G2E3Q7L622 706 aa23.75■■□□□ 1.39
CLN3-204ENST00000357857 FMNL2Q96PY5 1086 aa23.75■■□□□ 1.39
CLN3-204ENST00000357857 LAMB4A4D0S4 1761 aa23.74■■□□□ 1.39
CLN3-204ENST00000357857 GLI3P10071 1580 aa23.74■■□□□ 1.39
CLN3-204ENST00000357857 PRAMEF22A3QJZ6 481 aa23.73■■□□□ 1.39
CLN3-204ENST00000357857 FLIIQ13045 1269 aa23.72■■□□□ 1.39
CLN3-204ENST00000357857 CHPF2Q9P2E5 772 aa23.72■■□□□ 1.39
CLN3-204ENST00000357857 KCPQ6ZWJ8 1503 aa23.72■■□□□ 1.39
CLN3-204ENST00000357857 SNRPA1P09661 255 aaKnown RBP23.71■■□□□ 1.39
CLN3-204ENST00000357857 THSD7AQ9UPZ6 1657 aa23.71■■□□□ 1.39
CLN3-204ENST00000357857 MARCH10Q8NA82 808 aaPredicted RBP23.7■■□□□ 1.39
CLN3-204ENST00000357857 PIGBQ92521 554 aa23.7■■□□□ 1.38
CLN3-204ENST00000357857 DBF4Q9UBU7 674 aaPredicted RBP23.7■■□□□ 1.38
CLN3-204ENST00000357857 ATRNO75882 1429 aa23.7■■□□□ 1.38
CLN3-204ENST00000357857 BCL9O00512 1426 aa23.68■■□□□ 1.38
CLN3-204ENST00000357857 FKBP5Q13451 457 aaPredicted RBP23.68■■□□□ 1.38
CLN3-204ENST00000357857 N4BP2Q86UW6 1770 aaPredicted RBP23.68■■□□□ 1.38
CLN3-204ENST00000357857 INTS3Q68E01 1043 aaKnown RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms