RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-201ENST00000345005 DAXXQ9UER7 740 aaPredicted RBP16.22■□□□□ 0.19
CLK3-201ENST00000345005 TMEM57Q8N5G2 664 aa16.21■□□□□ 0.19
CLK3-201ENST00000345005 LGR6Q9HBX8 967 aa16.21■□□□□ 0.19
CLK3-201ENST00000345005 TEFQ10587 303 aa16.2■□□□□ 0.18
CLK3-201ENST00000345005 SPG7Q9UQ90 795 aa16.2■□□□□ 0.18
CLK3-201ENST00000345005 SCN11AQ9UI33 1791 aa16.2■□□□□ 0.18
CLK3-201ENST00000345005 ADAMTS7Q9UKP4 1686 aa16.2■□□□□ 0.18
CLK3-201ENST00000345005 AHDC1Q5TGY3 1603 aaPredicted RBP16.2■□□□□ 0.18
CLK3-201ENST00000345005 RNMTO43148 476 aaKnown RBP16.19■□□□□ 0.18
CLK3-201ENST00000345005 SIPA1L3O60292 1781 aaPredicted RBP16.19■□□□□ 0.18
CLK3-201ENST00000345005 MPRIPQ6WCQ1 1025 aa16.19■□□□□ 0.18
CLK3-201ENST00000345005 PKD1L3Q7Z443 1732 aa16.18■□□□□ 0.18
CLK3-201ENST00000345005 PTPRCP08575 1304 aa16.18■□□□□ 0.18
CLK3-201ENST00000345005 CHMP4AQ9BY43 222 aa16.18■□□□□ 0.18
CLK3-201ENST00000345005 RWDD1Q9H446 243 aaPredicted RBP16.18■□□□□ 0.18
CLK3-201ENST00000345005 ABCC4O15439 1325 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 IGHDP01880 384 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 PCDHB15Q9Y5E8 787 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 PARP4Q9UKK3 1724 aaKnown RBP16.17■□□□□ 0.18
CLK3-201ENST00000345005 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 CCDC30Q5VVM6 783 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 STK31Q9BXU1 1019 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 ANO8Q9HCE9 1232 aaPredicted RBP16.17■□□□□ 0.18
CLK3-201ENST00000345005 ZBTB40Q9NUA8 1239 aa16.17■□□□□ 0.18
CLK3-201ENST00000345005 COL5A2P05997 1499 aaPredicted RBP16.16■□□□□ 0.18
CLK3-201ENST00000345005 MEGF6O75095 1541 aa16.16■□□□□ 0.18
CLK3-201ENST00000345005 COL22A1Q8NFW1 1626 aaPredicted RBP16.15■□□□□ 0.18
CLK3-201ENST00000345005 BTBD11A6QL63 1104 aa16.15■□□□□ 0.18
CLK3-201ENST00000345005 FAM161AQ3B820 660 aa16.15■□□□□ 0.18
CLK3-201ENST00000345005 TOM1L2Q6ZVM7 507 aa16.15■□□□□ 0.18
CLK3-201ENST00000345005 IFNL2Q8IZJ0 200 aa16.15■□□□□ 0.18
CLK3-201ENST00000345005 HOXB7P09629 217 aa16.14■□□□□ 0.17
CLK3-201ENST00000345005 EIF4A1P60842 406 aaKnown RBP16.14■□□□□ 0.17
CLK3-201ENST00000345005 ZBTB7BO15156 539 aaPredicted RBP16.13■□□□□ 0.17
CLK3-201ENST00000345005 PHKG2P15735 406 aa16.13■□□□□ 0.17
CLK3-201ENST00000345005 EVA1CP58658 441 aa16.13■□□□□ 0.17
CLK3-201ENST00000345005 INTS3Q68E01 1043 aaKnown RBP16.13■□□□□ 0.17
CLK3-201ENST00000345005 CARD10Q9BWT7 1032 aa16.13■□□□□ 0.17
CLK3-201ENST00000345005 PHLPP1O60346 1717 aa16.13■□□□□ 0.17
CLK3-201ENST00000345005 HSP90AB1P08238 724 aaKnown RBP16.12■□□□□ 0.17
CLK3-201ENST00000345005 COL14A1Q05707 1796 aaKnown RBP16.12■□□□□ 0.17
CLK3-201ENST00000345005 HDAC1Q13547 482 aaPredicted RBP16.12■□□□□ 0.17
CLK3-201ENST00000345005 RGS12O14924 1447 aa16.11■□□□□ 0.17
CLK3-201ENST00000345005 DCAF5Q96JK2 942 aa16.1■□□□□ 0.17
CLK3-201ENST00000345005 GSE1Q14687 1217 aa16.1■□□□□ 0.17
CLK3-201ENST00000345005 HDGFL1Q5TGJ6 251 aa16.1■□□□□ 0.17
CLK3-201ENST00000345005 KDM6AO15550 1401 aaPredicted RBP16.09■□□□□ 0.17
CLK3-201ENST00000345005 ILDR2Q71H61 639 aa16.09■□□□□ 0.17
CLK3-201ENST00000345005 G2E3Q7L622 706 aa16.09■□□□□ 0.17
CLK3-201ENST00000345005 SLC52A2Q9HAB3 445 aa16.09■□□□□ 0.17
CLK3-201ENST00000345005 N4BP2Q86UW6 1770 aaPredicted RBP16.08■□□□□ 0.17
CLK3-201ENST00000345005 CYP27B1O15528 508 aa16.08■□□□□ 0.17
CLK3-201ENST00000345005 KCNQ3O43525 872 aa16.08■□□□□ 0.17
CLK3-201ENST00000345005 ZCRB1Q8TBF4 217 aaKnown RBP16.08■□□□□ 0.17
CLK3-201ENST00000345005 STRN4Q9NRL3 753 aa16.08■□□□□ 0.17
CLK3-201ENST00000345005 COL16A1Q07092 1604 aaPredicted RBP16.08■□□□□ 0.16
CLK3-201ENST00000345005 IL2RBP14784 551 aa16.08■□□□□ 0.16
CLK3-201ENST00000345005 LARP1Q6PKG0 1096 aaKnown RBP16.08■□□□□ 0.16
CLK3-201ENST00000345005 PCDH11XQ9BZA7 1347 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 PCDH11YQ9BZA8 1340 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 HEG1Q9ULI3 1381 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 CCT4P50991 539 aaKnown RBP16.07■□□□□ 0.16
CLK3-201ENST00000345005 FLIIQ13045 1269 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 SKAP1Q86WV1 359 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 NECTIN2Q92692 538 aa16.07■□□□□ 0.16
CLK3-201ENST00000345005 MRC1P22897 1456 aa16.06■□□□□ 0.16
CLK3-201ENST00000345005 BTG4Q9NY30 223 aa16.06■□□□□ 0.16
CLK3-201ENST00000345005 EIF2S2P20042 333 aaKnown RBP16.05■□□□□ 0.16
CLK3-201ENST00000345005 FKBP5Q13451 457 aaPredicted RBP16.05■□□□□ 0.16
CLK3-201ENST00000345005 NFATC2IPQ8NCF5 419 aa16.05■□□□□ 0.16
CLK3-201ENST00000345005 SHANK3Q9BYB0 1731 aa16.05■□□□□ 0.16
CLK3-201ENST00000345005 GIGYF1O75420 1035 aaPredicted RBP16.05■□□□□ 0.16
CLK3-201ENST00000345005 RGS3P49796 1198 aa16.05■□□□□ 0.16
CLK3-201ENST00000345005 NFKBIBQ15653 356 aa16.05■□□□□ 0.16
CLK3-201ENST00000345005 ZNF790Q6PG37 636 aa16.05■□□□□ 0.16
CLK3-201ENST00000345005 SMC5Q8IY18 1101 aa16.04■□□□□ 0.16
CLK3-201ENST00000345005 PDZRN3Q9UPQ7 1066 aa16.04■□□□□ 0.16
CLK3-201ENST00000345005 F6X3S4 739 aa16.03■□□□□ 0.16
CLK3-201ENST00000345005 CABP4P57796 275 aa16.03■□□□□ 0.16
CLK3-201ENST00000345005 NKX1-1Q15270 411 aaPredicted RBP16.03■□□□□ 0.16
CLK3-201ENST00000345005 SLC4A10Q6U841 1118 aa16.03■□□□□ 0.16
CLK3-201ENST00000345005 DBF4Q9UBU7 674 aaPredicted RBP16.03■□□□□ 0.16
CLK3-201ENST00000345005 PXDNLA1KZ92 1463 aa16.02■□□□□ 0.16
CLK3-201ENST00000345005 CHPF2Q9P2E5 772 aa16.02■□□□□ 0.16
CLK3-201ENST00000345005 ERVV-2B6SEH9 535 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 C8orf34Q49A92 452 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 GCC1Q96CN9 775 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 C1orf115Q9H7X2 142 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 PLCH1Q4KWH8 1693 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 C5P01031 1676 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 TTC5Q8N0Z6 440 aa16.01■□□□□ 0.15
CLK3-201ENST00000345005 PHAXQ9H814 394 aaKnown RBP16.01■□□□□ 0.15
CLK3-201ENST00000345005 SLC39A6Q13433 755 aa16■□□□□ 0.15
CLK3-201ENST00000345005 RPAP2Q8IXW5 612 aaPredicted RBP16■□□□□ 0.15
CLK3-201ENST00000345005 WNK3Q9BYP7 1800 aa15.99■□□□□ 0.15
CLK3-201ENST00000345005 BECN1Q14457 450 aa15.99■□□□□ 0.15
CLK3-201ENST00000345005 HYPKQ9NX55 129 aa15.99■□□□□ 0.15
CLK3-201ENST00000345005 DDX54Q8TDD1 881 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms