RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 STRN4Q9NRL3 753 aa16.98■□□□□ 0.31
HMGB1-202ENST00000339872 ZBTB40Q9NUA8 1239 aa16.98■□□□□ 0.31
HMGB1-202ENST00000339872 RBM19Q9Y4C8 960 aaKnown RBP16.98■□□□□ 0.31
HMGB1-202ENST00000339872 CACNA1FO60840 1977 aa16.98■□□□□ 0.31
HMGB1-202ENST00000339872 CCDC30Q5VVM6 783 aa16.98■□□□□ 0.31
HMGB1-202ENST00000339872 KDM6AO15550 1401 aaPredicted RBP16.98■□□□□ 0.31
HMGB1-202ENST00000339872 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
HMGB1-202ENST00000339872 RWDD1Q9H446 243 aaPredicted RBP16.97■□□□□ 0.31
HMGB1-202ENST00000339872 KCNQ3O43525 872 aa16.97■□□□□ 0.31
HMGB1-202ENST00000339872 IFNL2Q8IZJ0 200 aa16.97■□□□□ 0.31
HMGB1-202ENST00000339872 EVA1CP58658 441 aa16.96■□□□□ 0.31
HMGB1-202ENST00000339872 CHMP4BQ9H444 224 aaKnown RBP16.96■□□□□ 0.31
HMGB1-202ENST00000339872 COL14A1Q05707 1796 aaKnown RBP16.96■□□□□ 0.31
HMGB1-202ENST00000339872 COL16A1Q07092 1604 aaPredicted RBP16.96■□□□□ 0.31
HMGB1-202ENST00000339872 ZBTB7BO15156 539 aaPredicted RBP16.96■□□□□ 0.3
HMGB1-202ENST00000339872 G2E3Q7L622 706 aa16.96■□□□□ 0.3
HMGB1-202ENST00000339872 HDGFL1Q5TGJ6 251 aa16.95■□□□□ 0.3
HMGB1-202ENST00000339872 LARP1Q6PKG0 1096 aaKnown RBP16.95■□□□□ 0.3
HMGB1-202ENST00000339872 CYP27B1O15528 508 aa16.95■□□□□ 0.3
HMGB1-202ENST00000339872 CARD10Q9BWT7 1032 aa16.95■□□□□ 0.3
HMGB1-202ENST00000339872 INTS3Q68E01 1043 aaKnown RBP16.93■□□□□ 0.3
HMGB1-202ENST00000339872 HOXB7P09629 217 aa16.93■□□□□ 0.3
HMGB1-202ENST00000339872 RGS3P49796 1198 aa16.93■□□□□ 0.3
HMGB1-202ENST00000339872 SLC52A2Q9HAB3 445 aa16.93■□□□□ 0.3
HMGB1-202ENST00000339872 BTG4Q9NY30 223 aa16.93■□□□□ 0.3
HMGB1-202ENST00000339872 EIF2S2P20042 333 aaKnown RBP16.92■□□□□ 0.3
HMGB1-202ENST00000339872 PIP4K2BP78356 416 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 DCAF5Q96JK2 942 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 MRC1P22897 1456 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 SHANK3Q9BYB0 1731 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 IL2RBP14784 551 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 FLIIQ13045 1269 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 HDAC1Q13547 482 aaPredicted RBP16.92■□□□□ 0.3
HMGB1-202ENST00000339872 C1orf115Q9H7X2 142 aa16.92■□□□□ 0.3
HMGB1-202ENST00000339872 PCDH11XQ9BZA7 1347 aa16.91■□□□□ 0.3
HMGB1-202ENST00000339872 PCDH11YQ9BZA8 1340 aa16.91■□□□□ 0.3
HMGB1-202ENST00000339872 TOM1O60784 492 aa16.91■□□□□ 0.3
HMGB1-202ENST00000339872 HSP90AB1P08238 724 aaKnown RBP16.91■□□□□ 0.3
HMGB1-202ENST00000339872 F6X3S4 739 aa16.91■□□□□ 0.3
HMGB1-202ENST00000339872 FKBP5Q13451 457 aaPredicted RBP16.91■□□□□ 0.3
HMGB1-202ENST00000339872 ZCRB1Q8TBF4 217 aaKnown RBP16.91■□□□□ 0.3
HMGB1-202ENST00000339872 NFATC2IPQ8NCF5 419 aa16.9■□□□□ 0.3
HMGB1-202ENST00000339872 USP35Q9P2H5 1018 aa16.9■□□□□ 0.3
HMGB1-202ENST00000339872 SLC4A10Q6U841 1118 aa16.9■□□□□ 0.3
HMGB1-202ENST00000339872 N4BP2Q86UW6 1770 aaPredicted RBP16.89■□□□□ 0.29
HMGB1-202ENST00000339872 CHMP4AQ9BY43 222 aa16.89■□□□□ 0.29
HMGB1-202ENST00000339872 PLCH1Q4KWH8 1693 aa16.89■□□□□ 0.29
HMGB1-202ENST00000339872 HEG1Q9ULI3 1381 aa16.89■□□□□ 0.29
HMGB1-202ENST00000339872 C5P01031 1676 aa16.89■□□□□ 0.29
HMGB1-202ENST00000339872 SLC39A6Q13433 755 aa16.88■□□□□ 0.29
HMGB1-202ENST00000339872 GIGYF1O75420 1035 aaPredicted RBP16.88■□□□□ 0.29
HMGB1-202ENST00000339872 ZNF790Q6PG37 636 aa16.88■□□□□ 0.29
HMGB1-202ENST00000339872 CHPF2Q9P2E5 772 aa16.88■□□□□ 0.29
HMGB1-202ENST00000339872 PDZRN3Q9UPQ7 1066 aa16.88■□□□□ 0.29
HMGB1-202ENST00000339872 CCT4P50991 539 aaKnown RBP16.87■□□□□ 0.29
HMGB1-202ENST00000339872 PHAXQ9H814 394 aaKnown RBP16.87■□□□□ 0.29
HMGB1-202ENST00000339872 PDE4AP27815 886 aa16.86■□□□□ 0.29
HMGB1-202ENST00000339872 CABP4P57796 275 aa16.86■□□□□ 0.29
HMGB1-202ENST00000339872 PRAMEF22A3QJZ6 481 aa16.86■□□□□ 0.29
HMGB1-202ENST00000339872 UBAP1LF5GYI3 381 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 DDX54Q8TDD1 881 aaKnown RBP16.85■□□□□ 0.29
HMGB1-202ENST00000339872 MEIS3Q99687 375 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 PXDNLA1KZ92 1463 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 ADAMTS2O95450 1211 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 SMC5Q8IY18 1101 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 TTC5Q8N0Z6 440 aa16.85■□□□□ 0.29
HMGB1-202ENST00000339872 ANXA1P04083 346 aa16.84■□□□□ 0.29
HMGB1-202ENST00000339872 DBF4Q9UBU7 674 aaPredicted RBP16.84■□□□□ 0.29
HMGB1-202ENST00000339872 WNK3Q9BYP7 1800 aa16.84■□□□□ 0.29
HMGB1-202ENST00000339872 BACH2Q9BYV9 841 aa16.84■□□□□ 0.29
HMGB1-202ENST00000339872 NRAPQ86VF7 1730 aa16.83■□□□□ 0.29
HMGB1-202ENST00000339872 SIRT2Q8IXJ6 389 aa16.83■□□□□ 0.28
HMGB1-202ENST00000339872 TOGARAM1Q9Y4F4 1720 aa16.83■□□□□ 0.28
HMGB1-202ENST00000339872 ATP10DQ9P241 1426 aa16.82■□□□□ 0.28
HMGB1-202ENST00000339872 ZNF496Q96IT1 587 aaPredicted RBP16.82■□□□□ 0.28
HMGB1-202ENST00000339872 NUTM2BA6NNL0 878 aaPredicted RBP16.82■□□□□ 0.28
HMGB1-202ENST00000339872 NUTM2EB1AL46 878 aaPredicted RBP16.82■□□□□ 0.28
HMGB1-202ENST00000339872 NUTM2AQ8IVF1 878 aaPredicted RBP16.82■□□□□ 0.28
HMGB1-202ENST00000339872 NKX1-1Q15270 411 aaPredicted RBP16.81■□□□□ 0.28
HMGB1-202ENST00000339872 DISP2A7MBM2 1401 aa16.81■□□□□ 0.28
HMGB1-202ENST00000339872 LAMB4A4D0S4 1761 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 ERVV-2B6SEH9 535 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 PROSER3Q2NL68 480 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 PAPPAQ13219 1627 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 UBR2Q8IWV8 1755 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 GLI3P10071 1580 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 GCC1Q96CN9 775 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 FMNL2Q96PY5 1086 aa16.8■□□□□ 0.28
HMGB1-202ENST00000339872 FAM161AQ3B820 660 aa16.79■□□□□ 0.28
HMGB1-202ENST00000339872 ANKRD44Q8N8A2 993 aa16.79■□□□□ 0.28
HMGB1-202ENST00000339872 CEP85Q6P2H3 762 aa16.79■□□□□ 0.28
HMGB1-202ENST00000339872 RPAP2Q8IXW5 612 aaPredicted RBP16.79■□□□□ 0.28
HMGB1-202ENST00000339872 PI4KAP2A4QPH2 592 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 ADCY9O60503 1353 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 SNRPA1P09661 255 aaKnown RBP16.78■□□□□ 0.28
HMGB1-202ENST00000339872 NUCB1Q02818 461 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 PI4KAP1Q8N8J0 262 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 DDX21Q9NR30 783 aaKnown RBP eCLIP16.78■□□□□ 0.28
HMGB1-202ENST00000339872 HYPKQ9NX55 129 aa16.78■□□□□ 0.28
HMGB1-202ENST00000339872 NWD2Q9ULI1 1742 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms