RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 SLIT1O75093 1534 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 LRRC7Q96NW7 1537 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 ATP2B3Q16720 1220 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 IFT57Q9NWB7 429 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 PIK3R4Q99570 1358 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 TRIM6-TRIM34B2RNG4 842 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 EXOC6BQ9Y2D4 811 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 NCKAP5LQ9HCH0 1330 aa11.71□□□□□ -0.53
PTPRA-202ENST00000318266 ANKLE2Q86XL3 938 aa11.71□□□□□ -0.54
PTPRA-202ENST00000318266 CFAP44Q96MT7 982 aa11.71□□□□□ -0.54
PTPRA-202ENST00000318266 FAM135BQ49AJ0 1406 aa11.71□□□□□ -0.54
PTPRA-202ENST00000318266 VGFO15240 615 aaPredicted RBP11.7□□□□□ -0.54
PTPRA-202ENST00000318266 DMTNQ08495 405 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 SPC24Q8NBT2 197 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 PIBF1Q8WXW3 757 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 ZRANB1Q9UGI0 708 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 KIF3AQ9Y496 699 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 ARHGAP23Q9P227 1491 aa11.7□□□□□ -0.54
PTPRA-202ENST00000318266 MSH6P52701 1360 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 EFCAB6Q5THR3 1501 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 USP32Q8NFA0 1604 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 SETBP1Q9Y6X0 1596 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 F6X3S4 739 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRA-202ENST00000318266 RRS1Q15050 365 aaKnown RBP11.69□□□□□ -0.54
PTPRA-202ENST00000318266 BCL2L12Q9HB09 334 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 CNPY2Q9Y2B0 182 aa11.69□□□□□ -0.54
PTPRA-202ENST00000318266 FIBPO43427 364 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 PDE1AP54750 535 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 CDK19Q9BWU1 502 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 ADGRB3O60242 1522 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 PHF14O94880 888 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 RPAP2Q8IXW5 612 aaPredicted RBP11.68□□□□□ -0.54
PTPRA-202ENST00000318266 NWD1Q149M9 1564 aa11.68□□□□□ -0.54
PTPRA-202ENST00000318266 ZNF853P0CG23 659 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 HMGN5P82970 282 aaKnown RBP11.67□□□□□ -0.54
PTPRA-202ENST00000318266 MIS18AQ9NYP9 233 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 MROH1Q8NDA8 1641 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 UBR1Q8IWV7 1749 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 IFT172Q9UG01 1749 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 U2AF2P26368 475 aaKnown RBP eCLIP11.67□□□□□ -0.542e-8■■■□□ 17.9
PTPRA-202ENST00000318266 HSPA1LP34931 641 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 GIMAP6Q6P9H5 292 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 MCM10Q7L590 875 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 ATP10DQ9P241 1426 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 PLPPR3Q6T4P5 718 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 CHMP3Q9Y3E7 222 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 KNDC1Q76NI1 1749 aa11.67□□□□□ -0.54
PTPRA-202ENST00000318266 MCCP23508 829 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 PDCL2Q8N4E4 241 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 ESYT1Q9BSJ8 1104 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 SRCIN1Q9C0H9 1055 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 RTL1A6NKG5 1358 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 PNPLA6Q8IY17 1366 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 MAP4K4O95819 1239 aaPredicted RBP11.66□□□□□ -0.54
PTPRA-202ENST00000318266 NME9Q86XW9 330 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 PUS7Q96PZ0 661 aaKnown RBP11.66□□□□□ -0.54
PTPRA-202ENST00000318266 PYCARDQ9ULZ3 195 aa11.66□□□□□ -0.54
PTPRA-202ENST00000318266 SLC4A2P04920 1241 aa11.65□□□□□ -0.54
PTPRA-202ENST00000318266 CDK12Q9NYV4 1490 aaPredicted RBP11.65□□□□□ -0.54
PTPRA-202ENST00000318266 RIOK3O14730 519 aaKnown RBP11.65□□□□□ -0.54
PTPRA-202ENST00000318266 AEBP1Q8IUX7 1158 aa11.65□□□□□ -0.54
PTPRA-202ENST00000318266 RPGRIP1LQ68CZ1 1315 aa11.65□□□□□ -0.55
PTPRA-202ENST00000318266 CUL4AQ13619 759 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 IDI1Q13907 227 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 CCDC183Q5T5S1 534 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 UNC5CLQ8IV45 518 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 STRCP1A6NGW2 1772 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 IL13P35225 146 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 FKBP5Q13451 457 aaPredicted RBP11.64□□□□□ -0.55
PTPRA-202ENST00000318266 IL25Q9H293 177 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 WDR33Q9C0J8 1336 aaKnown RBP11.64□□□□□ -0.55
PTPRA-202ENST00000318266 SOX12O15370 315 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 AP5Z1O43299 807 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 HMMRO75330 724 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 MCM2P49736 904 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 CHAF1AQ13111 956 aaPredicted RBP11.64□□□□□ -0.55
PTPRA-202ENST00000318266 WAPLQ7Z5K2 1190 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 FAM184AQ8NB25 1140 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 NECTIN2Q92692 538 aa11.64□□□□□ -0.55
PTPRA-202ENST00000318266 UTP14CQ5TAP6 766 aaKnown RBP11.63□□□□□ -0.55
PTPRA-202ENST00000318266 G2E3Q7L622 706 aa11.63□□□□□ -0.55
PTPRA-202ENST00000318266 XIRP1Q702N8 1843 aaKnown RBP11.63□□□□□ -0.55
PTPRA-202ENST00000318266 RIMS2Q9UQ26 1411 aa11.63□□□□□ -0.55
PTPRA-202ENST00000318266 CD163L1Q9NR16 1453 aa11.63□□□□□ -0.55
PTPRA-202ENST00000318266 KDM4AO75164 1064 aa11.63□□□□□ -0.55
PTPRA-202ENST00000318266 LMOD3Q0VAK6 560 aa11.63□□□□□ -0.55
PTPRA-202ENST00000318266 CPA1P15085 419 aa11.62□□□□□ -0.55
PTPRA-202ENST00000318266 MX1P20591 662 aa11.62□□□□□ -0.55
PTPRA-202ENST00000318266 CHMLP26374 656 aa11.62□□□□□ -0.55
PTPRA-202ENST00000318266 IL1RAPL2Q9NP60 686 aa11.62□□□□□ -0.55
PTPRA-202ENST00000318266 KCNF1Q9H3M0 494 aa11.62□□□□□ -0.55
PTPRA-202ENST00000318266 PPLO60437 1756 aa11.61□□□□□ -0.55
PTPRA-202ENST00000318266 GTF2F1P35269 517 aaKnown RBP eCLIP11.61□□□□□ -0.55
PTPRA-202ENST00000318266 UVSSAQ2YD98 709 aa11.61□□□□□ -0.55
PTPRA-202ENST00000318266 SULT6B1Q6IMI4 303 aa11.61□□□□□ -0.55
PTPRA-202ENST00000318266 DDX54Q8TDD1 881 aaKnown RBP11.61□□□□□ -0.55
PTPRA-202ENST00000318266 INTS4Q96HW7 963 aaKnown RBP11.61□□□□□ -0.55
PTPRA-202ENST00000318266 ARHGEF28Q8N1W1 1705 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms