RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 PPFIA3O75145 1194 aa10.15□□□□□ -0.79
USF3-201ENST00000316407 SARNPP82979 210 aaKnown RBP10.15□□□□□ -0.79
USF3-201ENST00000316407 HCLS1P14317 486 aaPredicted RBP10.14□□□□□ -0.79
USF3-201ENST00000316407 KRBA2Q6ZNG9 492 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 ERC1Q8IUD2 1116 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 HSP90AA4PQ58FG1 418 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 PRIMPOLQ96LW4 560 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 TBC1D2BQ9UPU7 963 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 HIP1O00291 1037 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 KIF4AO95239 1232 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 GNAI2P04899 355 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 DDX23Q9BUQ8 820 aaKnown RBP10.14□□□□□ -0.79
USF3-201ENST00000316407 PPARDQ03181 441 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 RASSF4Q9H2L5 321 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 WASHC2CQ9Y4E1 1318 aa10.14□□□□□ -0.79
USF3-201ENST00000316407 HSF2BPO75031 334 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 FKBP4Q02790 459 aaKnown RBP eCLIP10.13□□□□□ -0.79
USF3-201ENST00000316407 NAP1L3Q99457 506 aaPredicted RBP10.13□□□□□ -0.79
USF3-201ENST00000316407 BLOC1S2Q6QNY1 142 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 ANO10Q9NW15 660 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 UACAQ9BZF9 1416 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 TDRD12Q587J7 1177 aaKnown RBP10.13□□□□□ -0.79
USF3-201ENST00000316407 AACSQ86V21 672 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 GCC1Q96CN9 775 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 TTC12Q9H892 705 aaPredicted RBP10.13□□□□□ -0.79
USF3-201ENST00000316407 PAXBP1Q9Y5B6 917 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 MXRA7P84157 204 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 ANKS4BQ8N8V4 417 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 CEP83Q9Y592 693 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 GUCY1B3Q02153 619 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 PPM1EQ8WY54 764 aa10.13□□□□□ -0.79
USF3-201ENST00000316407 CLCN1P35523 988 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CCDC171Q6TFL3 1326 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 NEBLO76041 1014 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 NOLC1Q14978 699 aaKnown RBP eCLIP10.12□□□□□ -0.79
USF3-201ENST00000316407 GNG11P61952 73 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 WDR66Q8TBY9 1149 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 ATRIPQ8WXE1 791 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 MTHFSP49914 203 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 DAAM2Q86T65 1068 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CCDC184Q52MB2 194 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CFAP58Q5T655 872 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CCDC121Q6ZUS5 278 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 EVA1CP58658 441 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 POTEB2H3BUK9 544 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 MCM5P33992 734 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CACNA2D4Q7Z3S7 1137 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 CCDC114Q96M63 670 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 SMARCA5O60264 1052 aaPredicted RBP10.12□□□□□ -0.79
USF3-201ENST00000316407 FBF1Q8TES7 1133 aa10.12□□□□□ -0.79
USF3-201ENST00000316407 GIMAP6Q6P9H5 292 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 UBA5Q9GZZ9 404 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 PPP6R1Q9UPN7 881 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 MVPQ14764 893 aaKnown RBP10.11□□□□□ -0.79
USF3-201ENST00000316407 ALS2CR12Q96Q35 445 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 RSRC1Q96IZ7 334 aaKnown RBP10.11□□□□□ -0.79
USF3-201ENST00000316407 FAM114A2Q9NRY5 505 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 A0A1W2PRG0 241 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 GNAI3P08754 354 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 C6orf163Q5TEZ5 329 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 SLC3A2P08195 630 aaKnown RBP10.11□□□□□ -0.79
USF3-201ENST00000316407 STX1AQ16623 288 aa10.11□□□□□ -0.79
USF3-201ENST00000316407 SMIM23A6NLE4 172 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 GGNBP2Q9H3C7 697 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 RABEP2Q9H5N1 569 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 SLC4A2P04920 1241 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 PRPF40BQ6NWY9 871 aaKnown RBP10.1□□□□□ -0.79
USF3-201ENST00000316407 MYO1BO43795 1136 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 CLNS1AP54105 237 aaKnown RBP10.1□□□□□ -0.79
USF3-201ENST00000316407 CAPZA3Q96KX2 299 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 LARP1Q6PKG0 1096 aaKnown RBP10.1□□□□□ -0.79
USF3-201ENST00000316407 CABP2Q9NPB3 220 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 RHOXF2BP0C7M4 288 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 RHOXF2Q9BQY4 288 aa10.1□□□□□ -0.79
USF3-201ENST00000316407 OTUD6BQ8N6M0 293 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 CDKL5O76039 1030 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 ATF7IPQ6VMQ6 1270 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 MIPOL1Q8TD10 442 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 TWISTNBQ3B726 338 aaPredicted RBP10.09□□□□□ -0.79
USF3-201ENST00000316407 SPTY2D1Q68D10 685 aaPredicted RBP10.09□□□□□ -0.79
USF3-201ENST00000316407 PDE1CQ14123 709 aaPredicted RBP10.09□□□□□ -0.79
USF3-201ENST00000316407 PDE3AQ14432 1141 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 ANO6Q4KMQ2 910 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 CFAP57Q96MR6 1250 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 A0A1B0GUL7 405 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 PPP1R14CQ8TAE6 165 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 PRKAR2BP31323 418 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 CCDC30Q5VVM6 783 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 HOOK3Q86VS8 718 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 FKBP15Q5T1M5 1219 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 PTGS1P23219 599 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 IL1RAPL2Q9NP60 686 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 SKILP12757 684 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 NUTM1Q86Y26 1132 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 CERS3Q8IU89 383 aa10.09□□□□□ -0.79
USF3-201ENST00000316407 PAFAH1B1P43034 410 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 GSDMDP57764 484 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 UBAC1Q9BSL1 405 aa10.08□□□□□ -0.8
USF3-201ENST00000316407 BUB1BO60566 1050 aaPredicted RBP10.08□□□□□ -0.8
USF3-201ENST00000316407 DNAI1Q9UI46 699 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms