RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SP4Q02446 784 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 SKOR2Q2VWA4 1001 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-201ENST00000303354 TAX1BP1Q86VP1 789 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 HELBQ8NG08 1087 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-201ENST00000303354 RRBP1Q9P2E9 1410 aaKnown RBP9.19□□□□□ -0.94
SCN9A-201ENST00000303354 ANKRD18BA2A2Z9 1011 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 TOM1O60784 492 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 AKNAD1Q5T1N1 836 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 NBPF6Q5VWK0 638 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 NBPF5PQ86XG9 351 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-201ENST00000303354 NBPF4Q96M43 638 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 CSPG5O95196 566 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 NAPBQ9H115 298 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 CD109Q6YHK3 1445 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 CCDC173Q0VFZ6 552 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 TAF3Q5VWG9 929 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 BLOC1S2Q6QNY1 142 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 DPH6Q7L8W6 267 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 CCDC61Q9Y6R9 512 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 SETQ01105 290 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-201ENST00000303354 CCDC181Q5TID7 509 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 LDHAL6AQ6ZMR3 332 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 UIMC1Q96RL1 719 aa9.19□□□□□ -0.94
SCN9A-201ENST00000303354 GOLIM4O00461 696 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 IMMTQ16891 758 aaKnown RBP9.18□□□□□ -0.94
SCN9A-201ENST00000303354 ZBTB21Q9ULJ3 1066 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 GRIN2BQ13224 1484 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 TMPOP42166 694 aaKnown RBP9.18□□□□□ -0.94
SCN9A-201ENST00000303354 NUCB2P80303 420 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 ADGRF5Q8IZF2 1346 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 LRRFIP2Q9Y608 721 aaKnown RBP9.18□□□□□ -0.94
SCN9A-201ENST00000303354 GPS2Q13227 327 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 DRC1Q96MC2 740 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 ZNF396Q96N95 335 aaPredicted RBP9.18□□□□□ -0.94
SCN9A-201ENST00000303354 KIF20AO95235 890 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 NOL7Q9UMY1 257 aaKnown RBP9.18□□□□□ -0.94
SCN9A-201ENST00000303354 HIP1O00291 1037 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 SLC5A1P13866 664 aa9.18□□□□□ -0.94
SCN9A-201ENST00000303354 NLRP5P59047 1200 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 C9orf84Q5VXU9 1444 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 IDI1Q13907 227 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 MSL1Q68DK7 614 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 ZNF354CQ86Y25 554 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 NAT10Q9H0A0 1025 aaKnown RBP9.17□□□□□ -0.94
SCN9A-201ENST00000303354 CHD1LQ86WJ1 897 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 FAM212AQ96EL1 285 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 PUF60Q9UHX1 559 aaKnown RBP9.17□□□□□ -0.94
SCN9A-201ENST00000303354 MYCP01106 439 aaPredicted RBP9.17□□□□□ -0.94
SCN9A-201ENST00000303354 SLC52A1Q9NWF4 448 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 MAP3K9P80192 1104 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 NFE2L2Q16236 605 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 EP400NLQ6ZTU2 488 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 SETDB2Q96T68 719 aa9.17□□□□□ -0.94
SCN9A-201ENST00000303354 CPLX3Q8WVH0 158 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 SBNO2Q9Y2G9 1366 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 CKAP2LQ8IYA6 745 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 CEP57L1Q8IYX8 460 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 ARHGEF11O15085 1522 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 AKNAQ7Z591 1439 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 FAM170AA1A519 330 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 SEPT7Q16181 437 aaKnown RBP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 NIP7Q9Y221 180 aaKnown RBP eCLIP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 RBM10P98175 930 aaKnown RBP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 SMARCE1Q969G3 411 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 TNMDQ9H2S6 317 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 CDK13Q14004 1512 aaKnown RBP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 UPF3BQ9BZI7 483 aaKnown RBP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 ZNF213O14771 459 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 ATF7IPQ6VMQ6 1270 aa9.16□□□□□ -0.94
SCN9A-201ENST00000303354 IFIT3O14879 490 aaKnown RBP9.16□□□□□ -0.94
SCN9A-201ENST00000303354 ZYXQ15942 572 aaKnown RBP9.15□□□□□ -0.94
SCN9A-201ENST00000303354 EAPPQ56P03 285 aaPredicted RBP9.15□□□□□ -0.94
SCN9A-201ENST00000303354 TSPY2A6NKD2 308 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 TNIP1Q15025 636 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 CUL5Q93034 780 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 LRRC2Q9BYS8 371 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 ACEP12821 1306 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 BMP2KQ9NSY1 1161 aaPredicted RBP9.15□□□□□ -0.94
SCN9A-201ENST00000303354 MYO1BO43795 1136 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 MACROD2A1Z1Q3 448 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 USP8P40818 1118 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 PPP4R3AQ6IN85 833 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 TSPY26PQ9H489 355 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 PKD2L1Q9P0L9 805 aa9.15□□□□□ -0.94
SCN9A-201ENST00000303354 PPFIBP1Q86W92 1011 aa9.15□□□□□ -0.95
SCN9A-201ENST00000303354 DDB1Q16531 1140 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 ZCRB1Q8TBF4 217 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 SPATA32Q96LK8 384 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 SAP30BPQ9UHR5 308 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 PARP3Q9Y6F1 533 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 LRRC9Q6ZRR7 1453 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 LARP1Q6PKG0 1096 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 TRAK2O60296 914 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 FAM98CQ17RN3 349 aaKnown RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 CTNNBL1Q8WYA6 563 aaPredicted RBP9.14□□□□□ -0.95
SCN9A-201ENST00000303354 CABP5Q9NP86 173 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 MAP3K12Q12852 859 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 UBE3BQ7Z3V4 1068 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 GCC1Q96CN9 775 aa9.14□□□□□ -0.95
SCN9A-201ENST00000303354 MRC2Q9UBG0 1479 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms