RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CCAR1Q8IX12 1150 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ALS2CR12Q96Q35 445 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 DDX23Q9BUQ8 820 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 MARCH6O60337 910 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 EIF2AQ9BY44 585 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 ZNF777Q9ULD5 760 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 API5Q9BZZ5 524 aaKnown RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 SEC16AO15027 2179 aa5.62□□□□□ -1.51
CSMD3-201ENST00000297405 NUP214P35658 2090 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-201ENST00000297405 GBP1P32455 592 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 PPP4R3BQ5MIZ7 849 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 GDAP1L1Q96MZ0 367 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 KDM2AQ9Y2K7 1162 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 TULP1O00294 542 aaPredicted RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 UTP14CQ5TAP6 766 aaKnown RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 RPAINQ86UA6 219 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 NUP133Q8WUM0 1156 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 POTEJP0CG39 1038 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC172P0C7W6 258 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 ATP5DP30049 168 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 CASQ1P31415 396 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 KRT32Q14532 448 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 BACH2Q9BYV9 841 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 NUCKS1Q9H1E3 243 aaKnown RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 VCX3AQ9NNX9 186 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 PPFIA1Q13136 1202 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 ZC4H2Q9NQZ6 224 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 KIF4AO95239 1232 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 DEUP1Q05D60 604 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 WDR63Q8IWG1 891 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 BANK1Q8NDB2 785 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 ARID1AO14497 2285 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 LRRFIP2Q9Y608 721 aaKnown RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 HDGFL2Q7Z4V5 671 aaPredicted RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 TAF4BQ92750 862 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 USP25Q9UHP3 1055 aa5.61□□□□□ -1.51
CSMD3-201ENST00000297405 FEZ2Q9UHY8 353 aaPredicted RBP5.61□□□□□ -1.51
CSMD3-201ENST00000297405 FSD2A1L4K1 749 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 SERPINC1P01008 464 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CTNNBL1Q8WYA6 563 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 ABCA1O95477 2261 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 SMG6Q86US8 1419 aaKnown RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 NPM1P06748 294 aaKnown RBP eCLIP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC121Q6ZUS5 278 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 GCC1Q96CN9 775 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC43Q96MW1 224 aaKnown RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 MYO15BQ96JP2 1530 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 ZWINTO95229 277 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 IFFO1Q0D2I5 559 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 LRRC45Q96CN5 670 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CCDC155Q8N6L0 562 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 PDCD2Q16342 344 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 RALYLQ86SE5 291 aaKnown RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 KIF20BQ96Q89 1820 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 MCM6Q14566 821 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 NAA16Q6N069 864 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 ZC3H15Q8WU90 426 aaKnown RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 FERMT1Q9BQL6 677 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CASTP20810 708 aaKnown RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 C16orf45Q96MC5 204 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-201ENST00000297405 MTUS1Q9ULD2 1270 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 ERCC6LQ2NKX8 1250 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CLUAP1Q96AJ1 413 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 DTNBP1Q96EV8 351 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 ANO10Q9NW15 660 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 BRPF3Q9ULD4 1205 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CABIN1Q9Y6J0 2220 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 CEP131Q9UPN4 1083 aa5.6□□□□□ -1.51
CSMD3-201ENST00000297405 KIF21AQ7Z4S6 1674 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 K7ELQ4 463 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 GTF2F1P35269 517 aaKnown RBP eCLIP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 SF3B2Q13435 895 aaKnown RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 NBPF8Q3BBV2 869 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 MAP7D1Q3KQU3 841 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 PPP1R15AO75807 674 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 RAB3IL1Q8TBN0 382 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 ZSCAN31Q96LW9 406 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 FAN1Q9Y2M0 1017 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 SPA17Q15506 151 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 TRIM7Q9C029 511 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 PLPPR3Q6T4P5 718 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 HDXQ7Z353 690 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 DHX37Q8IY37 1157 aaKnown RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 RPGRIP1Q96KN7 1286 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 PHAXQ9H814 394 aaKnown RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 KANK3Q6NY19 840 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 APLFQ8IW19 511 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 PDILTQ8N807 584 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 HSF2BPO75031 334 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 HDAC9Q9UKV0 1011 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 HDAC1Q13547 482 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-201ENST00000297405 Q9H521 79 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 PPP6R1Q9UPN7 881 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 CFAP58Q5T655 872 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 SCN2AQ99250 2005 aa5.59□□□□□ -1.51
CSMD3-201ENST00000297405 TICAM2Q86XR7 235 aa5.59□□□□□ -1.52
CSMD3-201ENST00000297405 CTAGE1Q96RT6 745 aa5.59□□□□□ -1.52
CSMD3-201ENST00000297405 MYO1BO43795 1136 aa5.59□□□□□ -1.52
CSMD3-201ENST00000297405 GMNNO75496 209 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms