RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 API5Q9BZZ5 524 aaKnown RBP19.79■□□□□ 0.76
LSM6-201ENST00000296581 ABCC4O15439 1325 aa19.79■□□□□ 0.76
LSM6-201ENST00000296581 PHKG2P15735 406 aa19.79■□□□□ 0.76
LSM6-201ENST00000296581 UBE2Q2Q8WVN8 375 aa19.79■□□□□ 0.76
LSM6-201ENST00000296581 CACNA1FO60840 1977 aa19.79■□□□□ 0.76
LSM6-201ENST00000296581 ITPRIPQ8IWB1 547 aa19.78■□□□□ 0.76
LSM6-201ENST00000296581 KDM6AO15550 1401 aaPredicted RBP19.78■□□□□ 0.76
LSM6-201ENST00000296581 IFNL2Q8IZJ0 200 aa19.77■□□□□ 0.76
LSM6-201ENST00000296581 RGS12O14924 1447 aa19.76■□□□□ 0.75
LSM6-201ENST00000296581 BTBD11A6QL63 1104 aa19.76■□□□□ 0.75
LSM6-201ENST00000296581 EIF4A1P60842 406 aaKnown RBP19.76■□□□□ 0.75
LSM6-201ENST00000296581 PTPRCP08575 1304 aa19.76■□□□□ 0.75
LSM6-201ENST00000296581 MRC1P22897 1456 aa19.76■□□□□ 0.75
LSM6-201ENST00000296581 HOXB7P09629 217 aa19.75■□□□□ 0.75
LSM6-201ENST00000296581 LARP1Q6PKG0 1096 aaKnown RBP19.75■□□□□ 0.75
LSM6-201ENST00000296581 PCDHB15Q9Y5E8 787 aa19.75■□□□□ 0.75
LSM6-201ENST00000296581 CYP27B1O15528 508 aa19.74■□□□□ 0.75
LSM6-201ENST00000296581 EVA1CP58658 441 aa19.74■□□□□ 0.75
LSM6-201ENST00000296581 STRN4Q9NRL3 753 aa19.74■□□□□ 0.75
LSM6-201ENST00000296581 SLC4A2P04920 1241 aa19.74■□□□□ 0.75
LSM6-201ENST00000296581 CCDC30Q5VVM6 783 aa19.74■□□□□ 0.75
LSM6-201ENST00000296581 IGHDP01880 384 aa19.73■□□□□ 0.75
LSM6-201ENST00000296581 ZBTB40Q9NUA8 1239 aa19.73■□□□□ 0.75
LSM6-201ENST00000296581 SHANK3Q9BYB0 1731 aa19.73■□□□□ 0.75
LSM6-201ENST00000296581 HSP90AB1P08238 724 aaKnown RBP19.73■□□□□ 0.75
LSM6-201ENST00000296581 DCAF5Q96JK2 942 aa19.73■□□□□ 0.75
LSM6-201ENST00000296581 BTG4Q9NY30 223 aa19.73■□□□□ 0.75
LSM6-201ENST00000296581 KCNQ3O43525 872 aa19.72■□□□□ 0.75
LSM6-201ENST00000296581 IL2RBP14784 551 aa19.72■□□□□ 0.75
LSM6-201ENST00000296581 STK31Q9BXU1 1019 aa19.72■□□□□ 0.75
LSM6-201ENST00000296581 SLC52A2Q9HAB3 445 aa19.72■□□□□ 0.75
LSM6-201ENST00000296581 HEG1Q9ULI3 1381 aa19.72■□□□□ 0.75
LSM6-201ENST00000296581 CHMP4BQ9H444 224 aaKnown RBP19.72■□□□□ 0.75
LSM6-201ENST00000296581 ZCRB1Q8TBF4 217 aaKnown RBP19.71■□□□□ 0.75
LSM6-201ENST00000296581 PCDH11XQ9BZA7 1347 aa19.71■□□□□ 0.75
LSM6-201ENST00000296581 PCDH11YQ9BZA8 1340 aa19.71■□□□□ 0.75
LSM6-201ENST00000296581 PIP4K2BP78356 416 aa19.71■□□□□ 0.75
LSM6-201ENST00000296581 PLCH1Q4KWH8 1693 aa19.7■□□□□ 0.74
LSM6-201ENST00000296581 ZBTB7BO15156 539 aaPredicted RBP19.7■□□□□ 0.74
LSM6-201ENST00000296581 INTS3Q68E01 1043 aaKnown RBP19.7■□□□□ 0.74
LSM6-201ENST00000296581 CHMP4AQ9BY43 222 aa19.7■□□□□ 0.74
LSM6-201ENST00000296581 G2E3Q7L622 706 aa19.69■□□□□ 0.74
LSM6-201ENST00000296581 UBAP1LF5GYI3 381 aa19.69■□□□□ 0.74
LSM6-201ENST00000296581 HDGFL1Q5TGJ6 251 aa19.69■□□□□ 0.74
LSM6-201ENST00000296581 RWDD1Q9H446 243 aaPredicted RBP19.68■□□□□ 0.74
LSM6-201ENST00000296581 NRAPQ86VF7 1730 aa19.67■□□□□ 0.74
LSM6-201ENST00000296581 HDAC1Q13547 482 aaPredicted RBP19.67■□□□□ 0.74
LSM6-201ENST00000296581 NKX1-1Q15270 411 aaPredicted RBP19.67■□□□□ 0.74
LSM6-201ENST00000296581 DISP2A7MBM2 1401 aa19.66■□□□□ 0.74
LSM6-201ENST00000296581 FLIIQ13045 1269 aa19.66■□□□□ 0.74
LSM6-201ENST00000296581 NFATC2IPQ8NCF5 419 aa19.66■□□□□ 0.74
LSM6-201ENST00000296581 GIGYF1O75420 1035 aaPredicted RBP19.65■□□□□ 0.74
LSM6-201ENST00000296581 N4BP2Q86UW6 1770 aaPredicted RBP19.65■□□□□ 0.74
LSM6-201ENST00000296581 WNK3Q9BYP7 1800 aa19.65■□□□□ 0.74
LSM6-201ENST00000296581 ZNF790Q6PG37 636 aa19.65■□□□□ 0.74
LSM6-201ENST00000296581 NECTIN2Q92692 538 aa19.65■□□□□ 0.74
LSM6-201ENST00000296581 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.73
LSM6-201ENST00000296581 NWD2Q9ULI1 1742 aa19.63■□□□□ 0.73
LSM6-201ENST00000296581 SKAP1Q86WV1 359 aa19.63■□□□□ 0.73
LSM6-201ENST00000296581 EIF2S2P20042 333 aaKnown RBP19.62■□□□□ 0.73
LSM6-201ENST00000296581 PXDNLA1KZ92 1463 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 C5P01031 1676 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 ERVV-2B6SEH9 535 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 CABP4P57796 275 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 SLC39A6Q13433 755 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 USP35Q9P2H5 1018 aa19.62■□□□□ 0.73
LSM6-201ENST00000296581 ADAMTS2O95450 1211 aa19.61■□□□□ 0.73
LSM6-201ENST00000296581 CCT4P50991 539 aaKnown RBP19.61■□□□□ 0.73
LSM6-201ENST00000296581 FKBP5Q13451 457 aaPredicted RBP19.61■□□□□ 0.73
LSM6-201ENST00000296581 CHPF2Q9P2E5 772 aa19.6■□□□□ 0.73
LSM6-201ENST00000296581 PAPPAQ13219 1627 aa19.6■□□□□ 0.73
LSM6-201ENST00000296581 F6X3S4 739 aa19.6■□□□□ 0.73
LSM6-201ENST00000296581 TOGARAM1Q9Y4F4 1720 aa19.6■□□□□ 0.73
LSM6-201ENST00000296581 GLI3P10071 1580 aa19.59■□□□□ 0.73
LSM6-201ENST00000296581 DBF4Q9UBU7 674 aaPredicted RBP19.59■□□□□ 0.73
LSM6-201ENST00000296581 SLIT2O94813 1529 aa19.59■□□□□ 0.73
LSM6-201ENST00000296581 UBR2Q8IWV8 1755 aa19.59■□□□□ 0.73
LSM6-201ENST00000296581 CERKQ8TCT0 537 aa19.59■□□□□ 0.73
LSM6-201ENST00000296581 DDX54Q8TDD1 881 aaKnown RBP19.59■□□□□ 0.73
LSM6-201ENST00000296581 PHAXQ9H814 394 aaKnown RBP19.59■□□□□ 0.73
LSM6-201ENST00000296581 JCADQ9P266 1359 aa19.58■□□□□ 0.73
LSM6-201ENST00000296581 PRAMEF22A3QJZ6 481 aa19.58■□□□□ 0.72
LSM6-201ENST00000296581 SMC5Q8IY18 1101 aa19.58■□□□□ 0.72
LSM6-201ENST00000296581 TTC5Q8N0Z6 440 aa19.58■□□□□ 0.72
LSM6-201ENST00000296581 ZNF496Q96IT1 587 aaPredicted RBP19.58■□□□□ 0.72
LSM6-201ENST00000296581 NUTM2BA6NNL0 878 aaPredicted RBP19.57■□□□□ 0.72
LSM6-201ENST00000296581 NUTM2EB1AL46 878 aaPredicted RBP19.57■□□□□ 0.72
LSM6-201ENST00000296581 NUTM2AQ8IVF1 878 aaPredicted RBP19.57■□□□□ 0.72
LSM6-201ENST00000296581 C1orf115Q9H7X2 142 aa19.57■□□□□ 0.72
LSM6-201ENST00000296581 SLC4A10Q6U841 1118 aa19.56■□□□□ 0.72
LSM6-201ENST00000296581 LAMB4A4D0S4 1761 aa19.56■□□□□ 0.72
LSM6-201ENST00000296581 FMNL2Q96PY5 1086 aa19.56■□□□□ 0.72
LSM6-201ENST00000296581 SPATA31A1Q5TZJ5 1347 aa19.55■□□□□ 0.72
LSM6-201ENST00000296581 PDZRN3Q9UPQ7 1066 aa19.55■□□□□ 0.72
LSM6-201ENST00000296581 THRAP3Q9Y2W1 955 aaKnown RBP19.55■□□□□ 0.72
LSM6-201ENST00000296581 LRP6O75581 1613 aa19.55■□□□□ 0.72
LSM6-201ENST00000296581 SNRPA1P09661 255 aaKnown RBP19.55■□□□□ 0.72
LSM6-201ENST00000296581 CDCA7Q9BWT1 371 aaPredicted RBP19.55■□□□□ 0.72
LSM6-201ENST00000296581 ATP10DQ9P241 1426 aa19.55■□□□□ 0.72
LSM6-201ENST00000296581 SIRT2Q8IXJ6 389 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms