RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 ACTN2P35609 894 aa10.12□□□□□ -0.79
NIPBL-201ENST00000282516 DDX46Q7L014 1031 aaKnown RBP10.11□□□□□ -0.79
NIPBL-201ENST00000282516 FBF1Q8TES7 1133 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 STMN4Q9H169 189 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-201ENST00000282516 PHF23Q9BUL5 403 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-201ENST00000282516 TMEM87AQ8NBN3 555 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 PIBF1Q8WXW3 757 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 TTC21AQ8NDW8 1320 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 KIF4BQ2VIQ3 1234 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 CCDC183Q5T5S1 534 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 MSL1Q68DK7 614 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 ANO10Q9NW15 660 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 AACSQ86V21 672 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 IQCGQ9H095 443 aaKnown RBP10.11□□□□□ -0.79
NIPBL-201ENST00000282516 RASAL2Q9UJF2 1139 aa10.11□□□□□ -0.79
NIPBL-201ENST00000282516 GSDMDP57764 484 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 STAC3Q96MF2 364 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 MNAT1P51948 309 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 PLVAPQ9BX97 442 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 U3KPZ7 1027 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-201ENST00000282516 CUL5Q93034 780 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 SCAND2PQ9GZW5 306 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-201ENST00000282516 UBA5Q9GZZ9 404 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 CCDC196A0A1B0GTZ2 297 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 CTAGE5O15320 804 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 PSMD1Q99460 953 aa10.1□□□□□ -0.79
NIPBL-201ENST00000282516 TMCO5BA8MYB1 307 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 JAKMIP1Q96N16 626 aaKnown RBP10.09□□□□□ -0.79
NIPBL-201ENST00000282516 CASTP20810 708 aaKnown RBP10.09□□□□□ -0.79
NIPBL-201ENST00000282516 CLIP2Q9UDT6 1046 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 MPNDQ8N594 471 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 A0A1W2PRG0 241 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 SYCE3A1L190 88 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 TTC14Q96N46 770 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 CCDC6Q16204 474 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 IFI16Q16666 785 aaKnown RBP10.09□□□□□ -0.79
NIPBL-201ENST00000282516 POLA1P09884 1462 aaPredicted RBP10.09□□□□□ -0.79
NIPBL-201ENST00000282516 MXRA7P84157 204 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 CCDC155Q8N6L0 562 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 PNISRQ8TF01 805 aaKnown RBP10.09□□□□□ -0.79
NIPBL-201ENST00000282516 PDE3AQ14432 1141 aa10.09□□□□□ -0.79
NIPBL-201ENST00000282516 AIDAQ96BJ3 306 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 USP5P45974 858 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 SMC6Q96SB8 1091 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 CLGNO14967 610 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 SLU7O95391 586 aaKnown RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 IVLP07476 585 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 SH2B1Q9NRF2 756 aaPredicted RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 PDZRN3Q9UPQ7 1066 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 MYOM3Q5VTT5 1437 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 A0A087WZG4 1122 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 FKBP4Q02790 459 aaKnown RBP eCLIP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 CKAP4Q07065 602 aaKnown RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 STXBP4Q6ZWJ1 553 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC172P0C7W6 258 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 DNAAF4Q8WXU2 420 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 MKRN1Q9UHC7 482 aaKnown RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 CCDC160A6NGH7 325 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 FAM177BA6PVY3 158 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 STX1AQ16623 288 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 HDGFL1Q5TGJ6 251 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 KLHL10Q6JEL2 608 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 SIL1Q9H173 461 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 PPP1R1BQ9UD71 204 aaPredicted RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 HSF2BPO75031 334 aa10.08□□□□□ -0.8
NIPBL-201ENST00000282516 PYM1Q9BRP8 204 aaKnown RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 TTC12Q9H892 705 aaPredicted RBP10.08□□□□□ -0.8
NIPBL-201ENST00000282516 SF3B2Q13435 895 aaKnown RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 RBM42Q9BTD8 480 aaKnown RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 GOLIM4O00461 696 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 LMAN1P49257 510 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 GTPBP4Q9BZE4 634 aaKnown RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 DNA2P51530 1060 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 TDRD12Q587J7 1177 aaKnown RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 ZSCAN29Q8IWY8 852 aaPredicted RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 KIF4AO95239 1232 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 GTF2F1P35269 517 aaKnown RBP eCLIP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 LRP2BPQ9P2M1 347 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 KIF3CO14782 793 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 CAVIN2O95810 425 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 SERPINA10Q9UK55 444 aa10.07□□□□□ -0.8
NIPBL-201ENST00000282516 TWISTNBQ3B726 338 aaPredicted RBP10.07□□□□□ -0.8
NIPBL-201ENST00000282516 RBM25P49756 843 aaKnown RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 HMGB1P1B2RPK0 211 aaPredicted RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 CAMK4Q16566 473 aa10.06□□□□□ -0.8
NIPBL-201ENST00000282516 RPUSD2Q8IZ73 545 aaKnown RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 C1orf115Q9H7X2 142 aa10.06□□□□□ -0.8
NIPBL-201ENST00000282516 IGHMBP2P38935 993 aaKnown RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 MAP7D1Q3KQU3 841 aa10.06□□□□□ -0.8
NIPBL-201ENST00000282516 TOP2AP11388 1531 aaKnown RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 DZIP1Q86YF9 867 aaKnown RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 CEP83Q9Y592 693 aa10.06□□□□□ -0.8
NIPBL-201ENST00000282516 URI1O94763 535 aaPredicted RBP10.06□□□□□ -0.8
NIPBL-201ENST00000282516 TNNT1P13805 278 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 MCM5P33992 734 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 ARL1P40616 181 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 TATP17735 454 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 KIF5AQ12840 1032 aa10.05□□□□□ -0.8
NIPBL-201ENST00000282516 PRPF4BQ13523 1007 aaKnown RBP10.05□□□□□ -0.8
NIPBL-201ENST00000282516 APBB1IPQ7Z5R6 666 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms