RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HOXB7P09629 217 aa19.28■□□□□ 0.68
SF3B4-201ENST00000271628 TATP17735 454 aaPredicted RBP19.28■□□□□ 0.68
SF3B4-201ENST00000271628 RGS12O14924 1447 aa19.28■□□□□ 0.68
SF3B4-201ENST00000271628 MPRIPQ6WCQ1 1025 aa19.27■□□□□ 0.68
SF3B4-201ENST00000271628 BTBD11A6QL63 1104 aa19.26■□□□□ 0.67
SF3B4-201ENST00000271628 DEKP35659 375 aaKnown RBP19.26■□□□□ 0.67
SF3B4-201ENST00000271628 SPG7Q9UQ90 795 aa19.26■□□□□ 0.67
SF3B4-201ENST00000271628 DDRGK1Q96HY6 314 aa19.26■□□□□ 0.67
SF3B4-201ENST00000271628 KDM3BQ7LBC6 1761 aa19.25■□□□□ 0.67
SF3B4-201ENST00000271628 EIF4A1P60842 406 aaKnown RBP19.25■□□□□ 0.67
SF3B4-201ENST00000271628 CHRNA2Q15822 529 aa19.25■□□□□ 0.67
SF3B4-201ENST00000271628 C8orf34Q49A92 452 aa19.25■□□□□ 0.67
SF3B4-201ENST00000271628 RTL5Q5HYW3 569 aaPredicted RBP19.25■□□□□ 0.67
SF3B4-201ENST00000271628 GCC1Q96CN9 775 aa19.25■□□□□ 0.67
SF3B4-201ENST00000271628 VIRMAQ69YN4 1812 aaKnown RBP19.25■□□□□ 0.67
SF3B4-201ENST00000271628 CCT4P50991 539 aaKnown RBP19.24■□□□□ 0.67
SF3B4-201ENST00000271628 HDGFL1Q5TGJ6 251 aa19.23■□□□□ 0.67
SF3B4-201ENST00000271628 NHSL1Q5SYE7 1610 aa19.23■□□□□ 0.67
SF3B4-201ENST00000271628 FLIIQ13045 1269 aa19.23■□□□□ 0.67
SF3B4-201ENST00000271628 G2E3Q7L622 706 aa19.23■□□□□ 0.67
SF3B4-201ENST00000271628 ADAMTS7Q9UKP4 1686 aa19.22■□□□□ 0.67
SF3B4-201ENST00000271628 PRDM11Q9NQV5 511 aa19.22■□□□□ 0.67
SF3B4-201ENST00000271628 RPAP2Q8IXW5 612 aaPredicted RBP19.21■□□□□ 0.67
SF3B4-201ENST00000271628 IFNL2Q8IZJ0 200 aa19.21■□□□□ 0.67
SF3B4-201ENST00000271628 NUCB1Q02818 461 aa19.2■□□□□ 0.66
SF3B4-201ENST00000271628 FKBP5Q13451 457 aaPredicted RBP19.2■□□□□ 0.66
SF3B4-201ENST00000271628 C1orf115Q9H7X2 142 aa19.2■□□□□ 0.66
SF3B4-201ENST00000271628 USP35Q9P2H5 1018 aa19.2■□□□□ 0.66
SF3B4-201ENST00000271628 PHKG2P15735 406 aa19.19■□□□□ 0.66
SF3B4-201ENST00000271628 SLC4A10Q6U841 1118 aa19.19■□□□□ 0.66
SF3B4-201ENST00000271628 WDR17Q8IZU2 1322 aa19.19■□□□□ 0.66
SF3B4-201ENST00000271628 SIPA1L3O60292 1781 aaPredicted RBP19.19■□□□□ 0.66
SF3B4-201ENST00000271628 NECTIN2Q92692 538 aa19.18■□□□□ 0.66
SF3B4-201ENST00000271628 MEGF6O75095 1541 aa19.18■□□□□ 0.66
SF3B4-201ENST00000271628 HSP90AB1P08238 724 aaKnown RBP19.18■□□□□ 0.66
SF3B4-201ENST00000271628 SIRT2Q8IXJ6 389 aa19.18■□□□□ 0.66
SF3B4-201ENST00000271628 CHD1LQ86WJ1 897 aa19.17■□□□□ 0.66
SF3B4-201ENST00000271628 SCN11AQ9UI33 1791 aa19.17■□□□□ 0.66
SF3B4-201ENST00000271628 F6X3S4 739 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 ANKRD44Q8N8A2 993 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 ABCA3Q99758 1704 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 KCNQ3O43525 872 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 EIF2S2P20042 333 aaKnown RBP19.16■□□□□ 0.66
SF3B4-201ENST00000271628 DCAF5Q96JK2 942 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 SLC52A2Q9HAB3 445 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 PXDNLA1KZ92 1463 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 PKD1L3Q7Z443 1732 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 HEG1Q9ULI3 1381 aa19.16■□□□□ 0.66
SF3B4-201ENST00000271628 TOM1L2Q6ZVM7 507 aa19.15■□□□□ 0.66
SF3B4-201ENST00000271628 GIGYF1O75420 1035 aaPredicted RBP19.15■□□□□ 0.66
SF3B4-201ENST00000271628 MEIS3Q99687 375 aa19.15■□□□□ 0.66
SF3B4-201ENST00000271628 COL5A2P05997 1499 aaPredicted RBP19.14■□□□□ 0.65
SF3B4-201ENST00000271628 ANKRD45Q5TZF3 282 aa19.14■□□□□ 0.65
SF3B4-201ENST00000271628 DBF4Q9UBU7 674 aaPredicted RBP19.14■□□□□ 0.65
SF3B4-201ENST00000271628 GNAI3P08754 354 aa19.13■□□□□ 0.65
SF3B4-201ENST00000271628 CEP85Q6P2H3 762 aa19.13■□□□□ 0.65
SF3B4-201ENST00000271628 DCTPP1Q9H773 170 aa19.13■□□□□ 0.65
SF3B4-201ENST00000271628 KDM6AO15550 1401 aaPredicted RBP19.13■□□□□ 0.65
SF3B4-201ENST00000271628 ATP10DQ9P241 1426 aa19.13■□□□□ 0.65
SF3B4-201ENST00000271628 PARP4Q9UKK3 1724 aaKnown RBP19.12■□□□□ 0.65
SF3B4-201ENST00000271628 LNPKQ9C0E8 428 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 N4BP2Q86UW6 1770 aaPredicted RBP19.12■□□□□ 0.65
SF3B4-201ENST00000271628 CYP27B1O15528 508 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 HMMRO75330 724 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 GNAI2P04899 355 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 ZNF790Q6PG37 636 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 CARD10Q9BWT7 1032 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 PHAXQ9H814 394 aaKnown RBP19.12■□□□□ 0.65
SF3B4-201ENST00000271628 CHPF2Q9P2E5 772 aa19.12■□□□□ 0.65
SF3B4-201ENST00000271628 NFATC2IPQ8NCF5 419 aa19.11■□□□□ 0.65
SF3B4-201ENST00000271628 EVA1CP58658 441 aa19.1■□□□□ 0.65
SF3B4-201ENST00000271628 PCDH11XQ9BZA7 1347 aa19.09■□□□□ 0.65
SF3B4-201ENST00000271628 PCDH11YQ9BZA8 1340 aa19.09■□□□□ 0.65
SF3B4-201ENST00000271628 ZCRB1Q8TBF4 217 aaKnown RBP19.09■□□□□ 0.65
SF3B4-201ENST00000271628 MRC1P22897 1456 aa19.09■□□□□ 0.65
SF3B4-201ENST00000271628 IL2RBP14784 551 aa19.09■□□□□ 0.65
SF3B4-201ENST00000271628 HYPKQ9NX55 129 aa19.08■□□□□ 0.64
SF3B4-201ENST00000271628 ROBO1Q9Y6N7 1651 aa19.07■□□□□ 0.64
SF3B4-201ENST00000271628 SRCIN1Q9C0H9 1055 aa19.07■□□□□ 0.64
SF3B4-201ENST00000271628 UPF2Q9HAU5 1272 aaKnown RBP19.07■□□□□ 0.64
SF3B4-201ENST00000271628 DAXXQ9UER7 740 aaPredicted RBP19.07■□□□□ 0.64
SF3B4-201ENST00000271628 TTC5Q8N0Z6 440 aa19.07■□□□□ 0.64
SF3B4-201ENST00000271628 DNAAF4Q8WXU2 420 aa19.07■□□□□ 0.64
SF3B4-201ENST00000271628 AHDC1Q5TGY3 1603 aaPredicted RBP19.06■□□□□ 0.64
SF3B4-201ENST00000271628 CABP4P57796 275 aa19.06■□□□□ 0.64
SF3B4-201ENST00000271628 STRN4Q9NRL3 753 aa19.06■□□□□ 0.64
SF3B4-201ENST00000271628 PI4KAP2A4QPH2 592 aa19.05■□□□□ 0.64
SF3B4-201ENST00000271628 PI4KAP1Q8N8J0 262 aa19.05■□□□□ 0.64
SF3B4-201ENST00000271628 LTBP4Q8N2S1 1624 aa19.05■□□□□ 0.64
SF3B4-201ENST00000271628 SLC39A6Q13433 755 aa19.05■□□□□ 0.64
SF3B4-201ENST00000271628 USP44Q9H0E7 712 aa19.05■□□□□ 0.64
SF3B4-201ENST00000271628 DDX21Q9NR30 783 aaKnown RBP eCLIP19.05■□□□□ 0.64
SF3B4-201ENST00000271628 BMP2KLQ5H9B9 411 aa19.04■□□□□ 0.64
SF3B4-201ENST00000271628 LARP1Q6PKG0 1096 aaKnown RBP19.04■□□□□ 0.64
SF3B4-201ENST00000271628 ERVV-2B6SEH9 535 aa19.04■□□□□ 0.64
SF3B4-201ENST00000271628 UBTFL1P0CB47 393 aaPredicted RBP19.04■□□□□ 0.64
SF3B4-201ENST00000271628 NKX1-1Q15270 411 aaPredicted RBP19.04■□□□□ 0.64
SF3B4-201ENST00000271628 DDX58O95786 925 aaKnown RBP19.03■□□□□ 0.64
SF3B4-201ENST00000271628 ATP8B2P98198 1209 aa19.03■□□□□ 0.64
SF3B4-201ENST00000271628 BEND3Q5T5X7 828 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms