RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 IL13P35225 146 aa13.26□□□□□ -0.29
VPS41-201ENST00000265745 SIK1P57059 783 aa13.26□□□□□ -0.29
VPS41-201ENST00000265745 AEBP1Q8IUX7 1158 aa13.26□□□□□ -0.29
VPS41-201ENST00000265745 FLAD1Q8NFF5 587 aa13.26□□□□□ -0.29
VPS41-201ENST00000265745 SHANK3Q9BYB0 1731 aa13.26□□□□□ -0.29
VPS41-201ENST00000265745 ERVV-2B6SEH9 535 aa13.25□□□□□ -0.29
VPS41-201ENST00000265745 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
VPS41-201ENST00000265745 AMOTQ4VCS5 1084 aa13.25□□□□□ -0.29
VPS41-201ENST00000265745 DCAF5Q96JK2 942 aa13.25□□□□□ -0.29
VPS41-201ENST00000265745 ATG3Q9NT62 314 aa13.25□□□□□ -0.29
VPS41-201ENST00000265745 SULT6B1Q6IMI4 303 aa13.24□□□□□ -0.29
VPS41-201ENST00000265745 AMIGO3Q86WK7 504 aa13.24□□□□□ -0.29
VPS41-201ENST00000265745 DOT1LQ8TEK3 1739 aa13.24□□□□□ -0.29
VPS41-201ENST00000265745 MTHFSP49914 203 aa13.23□□□□□ -0.29
VPS41-201ENST00000265745 ITPK1Q13572 414 aa13.23□□□□□ -0.29
VPS41-201ENST00000265745 ZNF530Q6P9A1 599 aaPredicted RBP13.23□□□□□ -0.29
VPS41-201ENST00000265745 LINC00116Q8NCU8 138 aa13.23□□□□□ -0.29
VPS41-201ENST00000265745 AK7Q96M32 723 aa13.23□□□□□ -0.29
VPS41-201ENST00000265745 ANKRD26Q9UPS8 1709 aa13.22□□□□□ -0.29
VPS41-201ENST00000265745 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
VPS41-201ENST00000265745 ATP6V1AP38606 617 aa13.22□□□□□ -0.29
VPS41-201ENST00000265745 CC2D1BQ5T0F9 858 aaKnown RBP13.22□□□□□ -0.29
VPS41-201ENST00000265745 MSL1Q68DK7 614 aa13.22□□□□□ -0.29
VPS41-201ENST00000265745 SMIM5Q71RC9 77 aa13.22□□□□□ -0.29
VPS41-201ENST00000265745 KLHL34Q8N239 644 aa13.22□□□□□ -0.29
VPS41-201ENST00000265745 KDRP35968 1356 aa13.21□□□□□ -0.29
VPS41-201ENST00000265745 UTRNP46939 3433 aa13.21□□□□□ -0.29
VPS41-201ENST00000265745 CABP4P57796 275 aa13.21□□□□□ -0.29
VPS41-201ENST00000265745 NLGN2Q8NFZ4 835 aa13.21□□□□□ -0.29
VPS41-201ENST00000265745 PHF14O94880 888 aa13.2□□□□□ -0.3
VPS41-201ENST00000265745 SSFA2P28290 1259 aa13.2□□□□□ -0.3
VPS41-201ENST00000265745 GPR162Q16538 588 aa13.2□□□□□ -0.3
VPS41-201ENST00000265745 C1orf141Q5JVX7 400 aa13.2□□□□□ -0.3
VPS41-201ENST00000265745 SLC4A9Q96Q91 983 aa13.2□□□□□ -0.3
VPS41-201ENST00000265745 LY75O60449 1722 aa13.19□□□□□ -0.3
VPS41-201ENST00000265745 PKD1L3Q7Z443 1732 aa13.19□□□□□ -0.3
VPS41-201ENST00000265745 MAP2P11137 1827 aaKnown RBP13.19□□□□□ -0.3
VPS41-201ENST00000265745 GNPATO15228 680 aa13.19□□□□□ -0.3
VPS41-201ENST00000265745 NFATC2IPQ8NCF5 419 aa13.19□□□□□ -0.3
VPS41-201ENST00000265745 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
VPS41-201ENST00000265745 CD2APQ9Y5K6 639 aa13.18□□□□□ -0.3
VPS41-201ENST00000265745 KDM6AO15550 1401 aaPredicted RBP13.18□□□□□ -0.3
VPS41-201ENST00000265745 NPC1L1Q9UHC9 1359 aa13.18□□□□□ -0.3
VPS41-201ENST00000265745 DIAPH1O60610 1272 aaKnown RBP13.17□□□□□ -0.3
VPS41-201ENST00000265745 AKAP4Q5JQC9 854 aa13.17□□□□□ -0.3
VPS41-201ENST00000265745 RC3H1Q5TC82 1133 aaKnown RBP13.17□□□□□ -0.3
VPS41-201ENST00000265745 TOGARAM1Q9Y4F4 1720 aa13.16□□□□□ -0.3
VPS41-201ENST00000265745 HMOX1P09601 288 aa13.16□□□□□ -0.3
VPS41-201ENST00000265745 TRAPPC3LQ5T215 181 aa13.16□□□□□ -0.3
VPS41-201ENST00000265745 ZNF784Q8NCA9 323 aaPredicted RBP13.16□□□□□ -0.3
VPS41-201ENST00000265745 PTCD1O75127 700 aaKnown RBP13.15□□□□□ -0.3
VPS41-201ENST00000265745 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
VPS41-201ENST00000265745 LGR6Q9HBX8 967 aa13.15□□□□□ -0.3
VPS41-201ENST00000265745 RTCBQ9Y3I0 505 aaKnown RBP13.15□□□□□ -0.3
VPS41-201ENST00000265745 QSER1Q2KHR3 1735 aa13.14□□□□□ -0.31
VPS41-201ENST00000265745 YBX3P16989 372 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS41-201ENST00000265745 CNGB1Q14028 1251 aaPredicted RBP13.14□□□□□ -0.31
VPS41-201ENST00000265745 MTHFSDQ2M296 383 aaKnown RBP13.14□□□□□ -0.31
VPS41-201ENST00000265745 CNTNAP4Q9C0A0 1308 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 GRIN3BO60391 1043 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 RPS6KA4O75676 772 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 SPOCK2Q92563 424 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 ARHGEF1Q92888 912 aaKnown RBP13.13□□□□□ -0.31
VPS41-201ENST00000265745 SLC52A2Q9HAB3 445 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 C4BP0C0L5 1744 aa13.13□□□□□ -0.31
VPS41-201ENST00000265745 RNMTO43148 476 aaKnown RBP13.12□□□□□ -0.31
VPS41-201ENST00000265745 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
VPS41-201ENST00000265745 COL24A1Q17RW2 1714 aa13.11□□□□□ -0.31
VPS41-201ENST00000265745 MMP10P09238 476 aa13.11□□□□□ -0.31
VPS41-201ENST00000265745 C5P01031 1676 aa13.11□□□□□ -0.31
VPS41-201ENST00000265745 U2SURPO15042 1029 aaKnown RBP13.1□□□□□ -0.31
VPS41-201ENST00000265745 RFC4P35249 363 aa13.1□□□□□ -0.31
VPS41-201ENST00000265745 CRKLP46109 303 aaKnown RBP13.1□□□□□ -0.31
VPS41-201ENST00000265745 ITGB4P16144 1822 aa13.1□□□□□ -0.31
VPS41-201ENST00000265745 GOLGB1Q14789 3259 aaKnown RBP13.1□□□□□ -0.31
VPS41-201ENST00000265745 TUBGCP6Q96RT7 1819 aa13.09□□□□□ -0.31
VPS41-201ENST00000265745 GYS1P13807 737 aa13.09□□□□□ -0.31
VPS41-201ENST00000265745 SLC39A6Q13433 755 aa13.09□□□□□ -0.31
VPS41-201ENST00000265745 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
VPS41-201ENST00000265745 DNAJC10Q8IXB1 793 aa13.08□□□□□ -0.32
VPS41-201ENST00000265745 IL17REQ8NFR9 667 aa13.07□□□□□ -0.32
VPS41-201ENST00000265745 CFAP53Q96M91 514 aa13.07□□□□□ -0.32
VPS41-201ENST00000265745 COL3A1P02461 1466 aaPredicted RBP13.06□□□□□ -0.32
VPS41-201ENST00000265745 CYP19A1P11511 503 aaPredicted RBP13.06□□□□□ -0.32
VPS41-201ENST00000265745 PPP2R1AP30153 589 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 DSG3P32926 999 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 TGFB2P61812 414 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 CCDC87Q9NVE4 849 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 SRP68Q9UHB9 627 aaKnown RBP13.06□□□□□ -0.32
VPS41-201ENST00000265745 TAF1LQ8IZX4 1826 aa13.06□□□□□ -0.32
VPS41-201ENST00000265745 GNAT3A8MTJ3 354 aa13.05□□□□□ -0.32
VPS41-201ENST00000265745 ECM2O94769 699 aaPredicted RBP13.05□□□□□ -0.32
VPS41-201ENST00000265745 VSIG10Q8N0Z9 540 aa13.05□□□□□ -0.32
VPS41-201ENST00000265745 PHACTR3Q96KR7 559 aa13.05□□□□□ -0.32
VPS41-201ENST00000265745 WWC3Q9ULE0 1092 aa13.05□□□□□ -0.32
VPS41-201ENST00000265745 PARP3Q9Y6F1 533 aa13.05□□□□□ -0.32
VPS41-201ENST00000265745 PRKAR2BP31323 418 aa13.04□□□□□ -0.32
VPS41-201ENST00000265745 RSPH6AQ9H0K4 717 aa13.04□□□□□ -0.32
VPS41-201ENST00000265745 NUDCQ9Y266 331 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms