RNA–Protein interactions for RNA: ENST00000264640.8

SMARCE1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-201ENST00000264640 POLD1P28340 1107 aa9.7□□□□□ -0.86
SMARCE1-201ENST00000264640 GPBP1L1Q9HC44 474 aaPredicted RBP9.7□□□□□ -0.86
SMARCE1-201ENST00000264640 AXIN2Q9Y2T1 843 aa9.7□□□□□ -0.86
SMARCE1-201ENST00000264640 CPSF1Q10570 1443 aaKnown RBP9.7□□□□□ -0.86
SMARCE1-201ENST00000264640 PPIP5K1Q6PFW1 1433 aa9.7□□□□□ -0.86
SMARCE1-201ENST00000264640 BRD4O60885 1362 aaPredicted RBP9.69□□□□□ -0.86
SMARCE1-201ENST00000264640 CSB-PGBD3P0DP91 1061 aa9.69□□□□□ -0.86
SMARCE1-201ENST00000264640 LRRC4BQ9NT99 713 aa9.69□□□□□ -0.86
SMARCE1-201ENST00000264640 LTN1O94822 1766 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 LY75O60449 1722 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 DOT1LQ8TEK3 1739 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 USP6P35125 1406 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 PNPLA7Q6ZV29 1317 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 SOX12O15370 315 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 DDX10Q13206 875 aaKnown RBP9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 HS3ST6Q96QI5 342 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 CDCA7Q9BWT1 371 aaPredicted RBP9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 WDR90Q96KV7 1748 aa9.68□□□□□ -0.86
SMARCE1-201ENST00000264640 ADCY9O60503 1353 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 EXOC5O00471 708 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 HOXB3P14651 431 aaPredicted RBP9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 KCNQ4P56696 695 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 NLRP6P59044 892 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 KRTAP3-3Q9BYR6 98 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 KRTAP3-2Q9BYR7 98 aa9.67□□□□□ -0.86
SMARCE1-201ENST00000264640 GRIN3BO60391 1043 aa9.66□□□□□ -0.86
SMARCE1-201ENST00000264640 DCAF11Q8TEB1 546 aa9.66□□□□□ -0.86
SMARCE1-201ENST00000264640 FAM205CA6NFA0 338 aa9.65□□□□□ -0.86
SMARCE1-201ENST00000264640 CARD10Q9BWT7 1032 aa9.65□□□□□ -0.86
SMARCE1-201ENST00000264640 WWC3Q9ULE0 1092 aa9.65□□□□□ -0.86
SMARCE1-201ENST00000264640 NFAT5O94916 1531 aa9.65□□□□□ -0.86
SMARCE1-201ENST00000264640 G3V3G9 751 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 SRPK2P78362 688 aaKnown RBP9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 MSL1Q68DK7 614 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 SLC16A10Q8TF71 515 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 TFCP2L1Q9NZI6 479 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 KIAA1210Q9ULL0 1709 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 C5P01031 1676 aa9.64□□□□□ -0.87
SMARCE1-201ENST00000264640 CCDC7Q96M83 1385 aa9.63□□□□□ -0.87
SMARCE1-201ENST00000264640 EIF4G2P78344 907 aaKnown RBP eCLIP9.63□□□□□ -0.87
SMARCE1-201ENST00000264640 COL13A1Q5TAT6 717 aaPredicted RBP9.63□□□□□ -0.87
SMARCE1-201ENST00000264640 TAF1LQ8IZX4 1826 aa9.62□□□□□ -0.87
SMARCE1-201ENST00000264640 ARHGEF25Q86VW2 580 aa9.62□□□□□ -0.87
SMARCE1-201ENST00000264640 RGPD2P0DJD1 1756 aa9.61□□□□□ -0.87
SMARCE1-201ENST00000264640 KIF3CO14782 793 aa9.61□□□□□ -0.87
SMARCE1-201ENST00000264640 EFCAB3Q8N7B9 438 aa9.61□□□□□ -0.87
SMARCE1-201ENST00000264640 USP54Q70EL1 1684 aa9.61□□□□□ -0.87
SMARCE1-201ENST00000264640 MON2Q7Z3U7 1717 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 NEFLP07196 543 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 HOXB1P14653 301 aaPredicted RBP9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 APLP1P51693 650 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 DNAJC5GQ8N7S2 189 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 NLRP2Q9NX02 1062 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 CABP1Q9NZU7 370 aa9.6□□□□□ -0.87
SMARCE1-201ENST00000264640 PCNTO95613 3336 aa9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 HTRA3P83110 453 aa9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 SLC27A3Q5K4L6 730 aa9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 COL23A1Q86Y22 540 aaPredicted RBP9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 SYTL4Q96C24 671 aaPredicted RBP9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 TOGARAM1Q9Y4F4 1720 aa9.59□□□□□ -0.87
SMARCE1-201ENST00000264640 N4BP2Q86UW6 1770 aaPredicted RBP9.58□□□□□ -0.88
SMARCE1-201ENST00000264640 IL2RBP14784 551 aa9.58□□□□□ -0.88
SMARCE1-201ENST00000264640 FAM208AQ9UK61 1670 aaKnown RBP9.58□□□□□ -0.88
SMARCE1-201ENST00000264640 ERBB3P21860 1342 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 CICQ96RK0 1608 aaPredicted RBP9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 HSPA5P11021 654 aaKnown RBP9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 DOK7Q18PE1 504 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 TNS4Q8IZW8 715 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 KCNH5Q8NCM2 988 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 DDX54Q8TDD1 881 aaKnown RBP9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 NSD2O96028 1365 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 UBR3Q6ZT12 1888 aa9.57□□□□□ -0.88
SMARCE1-201ENST00000264640 TTC21BQ7Z4L5 1316 aa9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 IGSF1Q8N6C5 1336 aa9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 CENPJQ9HC77 1338 aaPredicted RBP9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 NBPF1Q3BBV0 1214 aa9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 ZNF710Q8N1W2 664 aa9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 CCNL1Q9UK58 526 aaPredicted RBP9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 SUPT16HQ9Y5B9 1047 aaKnown RBP9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 KIAA1551Q9HCM1 1747 aa9.56□□□□□ -0.88
SMARCE1-201ENST00000264640 PRIM1P49642 420 aaKnown RBP9.55□□□□□ -0.88
SMARCE1-201ENST00000264640 PRELPP51888 382 aa9.55□□□□□ -0.88
SMARCE1-201ENST00000264640 L3MBTL2Q969R5 705 aa9.55□□□□□ -0.88
SMARCE1-201ENST00000264640 CD2APQ9Y5K6 639 aa9.55□□□□□ -0.88
SMARCE1-201ENST00000264640 PKD1L3Q7Z443 1732 aa9.55□□□□□ -0.88
SMARCE1-201ENST00000264640 C4BP0C0L5 1744 aa9.54□□□□□ -0.88
SMARCE1-201ENST00000264640 ANKRD36BQ8N2N9 1353 aa9.54□□□□□ -0.88
SMARCE1-201ENST00000264640 TMEM92Q6UXU6 159 aa9.54□□□□□ -0.88
SMARCE1-201ENST00000264640 MICALL2Q8IY33 904 aa9.54□□□□□ -0.88
SMARCE1-201ENST00000264640 RNF25Q96BH1 459 aaPredicted RBP9.54□□□□□ -0.88
SMARCE1-201ENST00000264640 RIOK3O14730 519 aaKnown RBP9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 TOMM70O94826 608 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 ANKRD24Q8TF21 1146 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 KLRG1Q96E93 195 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 NMRK2Q9NPI5 230 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 ITGB4P16144 1822 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 KIF13BQ9NQT8 1826 aa9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 BRCA1P38398 1863 aaKnown RBP9.53□□□□□ -0.88
SMARCE1-201ENST00000264640 SMIM5Q71RC9 77 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms