RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 LRRC37A3O60309 1634 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 CEMIPQ8WUJ3 1361 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 GNAI1P63096 354 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 CALD1Q05682 793 aaKnown RBP12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 DDB1Q16531 1140 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 MYH16Q9H6N6 1097 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
SNRNP40-201ENST00000263694 CHL1O00533 1208 aa12.66□□□□□ -0.38
SNRNP40-201ENST00000263694 EXOSC9Q06265 439 aaKnown RBP12.66□□□□□ -0.38
SNRNP40-201ENST00000263694 PLEKHG2Q9H7P9 1386 aa12.66□□□□□ -0.38
SNRNP40-201ENST00000263694 TEFQ10587 303 aa12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 TAF7Q15545 349 aaPredicted RBP12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 KRT24Q2M2I5 525 aa12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 MARCH10Q8NA82 808 aaPredicted RBP12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 DCAF5Q96JK2 942 aa12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 CDCA7Q9BWT1 371 aaPredicted RBP12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 ADAMTS7Q9UKP4 1686 aa12.65□□□□□ -0.38
SNRNP40-201ENST00000263694 ELL2O00472 640 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 KCNQ3O43525 872 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 ILDR1Q86SU0 546 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 NFATC2IPQ8NCF5 419 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 RGS17Q9UGC6 210 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 TSPYL4Q9UJ04 414 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 TNS2Q63HR2 1409 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 NKX1-1Q15270 411 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 FAM182BQ5T319 152 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 TSPYL6Q8N831 410 aa12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 SIPA1L3O60292 1781 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-201ENST00000263694 TOGARAM1Q9Y4F4 1720 aa12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 BTBD11A6QL63 1104 aa12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 HSP90AB1P08238 724 aaKnown RBP12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 C8orf58Q8NAV2 365 aa12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 SLC52A2Q9HAB3 445 aa12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 SUPT16HQ9Y5B9 1047 aaKnown RBP12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 THSD7AQ9UPZ6 1657 aa12.63□□□□□ -0.39
SNRNP40-201ENST00000263694 CABP4P57796 275 aa12.62□□□□□ -0.39
SNRNP40-201ENST00000263694 SLC39A6Q13433 755 aa12.62□□□□□ -0.39
SNRNP40-201ENST00000263694 ZNF772Q68DY9 489 aaPredicted RBP12.62□□□□□ -0.39
SNRNP40-201ENST00000263694 SEPT12Q8IYM1 358 aa12.62□□□□□ -0.39
SNRNP40-201ENST00000263694 ACSBG1Q96GR2 724 aa12.61□□□□□ -0.39
SNRNP40-201ENST00000263694 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
SNRNP40-201ENST00000263694 ITGB4P16144 1822 aa12.61□□□□□ -0.39
SNRNP40-201ENST00000263694 ONECUT3O60422 494 aaPredicted RBP12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 POTEAQ6S8J7 498 aa12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 KDM3BQ7LBC6 1761 aa12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 ERVV-2B6SEH9 535 aa12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 TCERG1O14776 1098 aaKnown RBP12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 SYTL4Q96C24 671 aaPredicted RBP12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 BRWD3Q6RI45 1802 aa12.6□□□□□ -0.39
SNRNP40-201ENST00000263694 MRC1P22897 1456 aa12.59□□□□□ -0.39
SNRNP40-201ENST00000263694 VAMP4O75379 141 aa12.59□□□□□ -0.39
SNRNP40-201ENST00000263694 BCAR3O75815 825 aa12.59□□□□□ -0.39
SNRNP40-201ENST00000263694 PRIM1P49642 420 aaKnown RBP12.59□□□□□ -0.39
SNRNP40-201ENST00000263694 BCL2L13Q9BXK5 485 aa12.59□□□□□ -0.39
SNRNP40-201ENST00000263694 DOT1LQ8TEK3 1739 aa12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 EIF4A1P60842 406 aaKnown RBP12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 RBM6P78332 1123 aaKnown RBP12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 TWISTNBQ3B726 338 aaPredicted RBP12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 SP7Q8TDD2 431 aaPredicted RBP12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 PIGBQ92521 554 aa12.58□□□□□ -0.4
SNRNP40-201ENST00000263694 KCNQ2O43526 872 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 PLIN1O60240 522 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 RARSP54136 660 aaKnown RBP12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 ZNF790Q6PG37 636 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 PTF1AQ7RTS3 328 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 AKT1S1Q96B36 256 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 BABAM1Q9NWV8 329 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 TMOD3Q9NYL9 352 aa12.57□□□□□ -0.4
SNRNP40-201ENST00000263694 PRAMEF22A3QJZ6 481 aa12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 RXRBP28702 533 aa12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 IRX6P78412 446 aaPredicted RBP12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 NECTIN2Q92692 538 aa12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 ASAP1Q9ULH1 1129 aa12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 SSH1Q8WYL5 1049 aa12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 ZNF496Q96IT1 587 aaPredicted RBP12.56□□□□□ -0.4
SNRNP40-201ENST00000263694 PTCD1O75127 700 aaKnown RBP12.55□□□□□ -0.4
SNRNP40-201ENST00000263694 KRT27Q7Z3Y8 459 aa12.54□□□□□ -0.4
SNRNP40-201ENST00000263694 TTC5Q8N0Z6 440 aa12.54□□□□□ -0.4
SNRNP40-201ENST00000263694 ATG3Q9NT62 314 aa12.54□□□□□ -0.4
SNRNP40-201ENST00000263694 BCL9O00512 1426 aa12.54□□□□□ -0.4
SNRNP40-201ENST00000263694 GIGYF1O75420 1035 aaPredicted RBP12.53□□□□□ -0.4
SNRNP40-201ENST00000263694 CT47B1P0C2W7 299 aaPredicted RBP12.53□□□□□ -0.4
SNRNP40-201ENST00000263694 EIF2S2P20042 333 aaKnown RBP12.53□□□□□ -0.4
SNRNP40-201ENST00000263694 PAPPAQ13219 1627 aa12.53□□□□□ -0.4
SNRNP40-201ENST00000263694 RRP1P56182 461 aaKnown RBP12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 FRAT1Q92837 279 aaPredicted RBP12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 SMC4Q9NTJ3 1288 aa12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 TNNQ9UQP3 1299 aa12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 SBF2Q86WG5 1849 aa12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 C5P01031 1676 aa12.52□□□□□ -0.4
SNRNP40-201ENST00000263694 HEG1Q9ULI3 1381 aa12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 RNF123Q5XPI4 1314 aa12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 RGS12O14924 1447 aa12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 MRPL50Q8N5N7 158 aaKnown RBP12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 FMNL2Q96PY5 1086 aa12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 ZBTB12Q9Y330 459 aaPredicted RBP12.52□□□□□ -0.41
SNRNP40-201ENST00000263694 KCPQ6ZWJ8 1503 aa12.51□□□□□ -0.41
SNRNP40-201ENST00000263694 UBR2Q8IWV8 1755 aa12.51□□□□□ -0.41
SNRNP40-201ENST00000263694 C20orf194Q5TEA3 1177 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms