RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 UBAP1LF5GYI3 381 aa23.37■■□□□ 1.33
PDLIM4-201ENST00000253754 IL17REQ8NFR9 667 aa23.37■■□□□ 1.33
PDLIM4-201ENST00000253754 CHRNA2Q15822 529 aa23.36■■□□□ 1.33
PDLIM4-201ENST00000253754 NECTIN2Q92692 538 aa23.36■■□□□ 1.33
PDLIM4-201ENST00000253754 SLC4A10Q6U841 1118 aa23.36■■□□□ 1.33
PDLIM4-201ENST00000253754 MAP3K5Q99683 1374 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 LRRC37A3O60309 1634 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 CEP85Q6P2H3 762 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 ANKRD44Q8N8A2 993 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 HTATSF1O43719 755 aaKnown RBP23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 DCTPP1Q9H773 170 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 ERBB3P21860 1342 aa23.35■■□□□ 1.33
PDLIM4-201ENST00000253754 CRYBG1Q9Y4K1 1723 aa23.34■■□□□ 1.33
PDLIM4-201ENST00000253754 SPRYD3Q8NCJ5 442 aa23.34■■□□□ 1.33
PDLIM4-201ENST00000253754 C16orf71Q8IYS4 520 aaPredicted RBP23.33■■□□□ 1.32
PDLIM4-201ENST00000253754 NHSL1Q5SYE7 1610 aa23.31■■□□□ 1.32
PDLIM4-201ENST00000253754 APBB1O00213 710 aa23.31■■□□□ 1.32
PDLIM4-201ENST00000253754 ANTXR1Q9H6X2 564 aa23.31■■□□□ 1.32
PDLIM4-201ENST00000253754 ROBO1Q9Y6N7 1651 aa23.31■■□□□ 1.32
PDLIM4-201ENST00000253754 CERKQ8TCT0 537 aa23.31■■□□□ 1.32
PDLIM4-201ENST00000253754 GSPT1P15170 499 aaKnown RBP23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 TBC1D9Q6ZT07 1266 aa23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 OTUD7AQ8TE49 926 aaPredicted RBP23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 COL18A1P39060 1754 aa23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 PLEKHM2Q8IWE5 1019 aa23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 RPAP2Q8IXW5 612 aaPredicted RBP23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 STK31Q9BXU1 1019 aa23.3■■□□□ 1.32
PDLIM4-201ENST00000253754 SMARCA5O60264 1052 aaPredicted RBP23.29■■□□□ 1.32
PDLIM4-201ENST00000253754 TOM1O60784 492 aa23.29■■□□□ 1.32
PDLIM4-201ENST00000253754 NLRP2Q9NX02 1062 aa23.29■■□□□ 1.32
PDLIM4-201ENST00000253754 CPDO75976 1380 aa23.29■■□□□ 1.32
PDLIM4-201ENST00000253754 CSB-PGBD3P0DP91 1061 aa23.28■■□□□ 1.32
PDLIM4-201ENST00000253754 TAF7Q15545 349 aaPredicted RBP23.28■■□□□ 1.32
PDLIM4-201ENST00000253754 FLIIQ13045 1269 aa23.28■■□□□ 1.32
PDLIM4-201ENST00000253754 PRDM11Q9NQV5 511 aa23.28■■□□□ 1.32
PDLIM4-201ENST00000253754 NCAPD2Q15021 1401 aa23.27■■□□□ 1.32
PDLIM4-201ENST00000253754 RBM25P49756 843 aaKnown RBP23.26■■□□□ 1.31
PDLIM4-201ENST00000253754 FKBP5Q13451 457 aaPredicted RBP23.26■■□□□ 1.31
PDLIM4-201ENST00000253754 CCDC30Q5VVM6 783 aa23.26■■□□□ 1.31
PDLIM4-201ENST00000253754 CCT4P50991 539 aaKnown RBP23.26■■□□□ 1.31
PDLIM4-201ENST00000253754 PLEKHO1Q53GL0 409 aaPredicted RBP23.25■■□□□ 1.31
PDLIM4-201ENST00000253754 LGR6Q9HBX8 967 aa23.25■■□□□ 1.31
PDLIM4-201ENST00000253754 FAM208AQ9UK61 1670 aaKnown RBP23.25■■□□□ 1.31
PDLIM4-201ENST00000253754 CAMTA1Q9Y6Y1 1673 aa23.24■■□□□ 1.31
PDLIM4-201ENST00000253754 ZNF530Q6P9A1 599 aaPredicted RBP23.24■■□□□ 1.31
PDLIM4-201ENST00000253754 AMOTQ4VCS5 1084 aa23.23■■□□□ 1.31
PDLIM4-201ENST00000253754 TTC22Q5TAA0 569 aa23.22■■□□□ 1.31
PDLIM4-201ENST00000253754 CEMIPQ8WUJ3 1361 aa23.21■■□□□ 1.31
PDLIM4-201ENST00000253754 CDC45O75419 566 aa23.21■■□□□ 1.31
PDLIM4-201ENST00000253754 RAPGEF4Q8WZA2 1011 aa23.21■■□□□ 1.31
PDLIM4-201ENST00000253754 ABCC6O95255 1503 aa23.21■■□□□ 1.31
PDLIM4-201ENST00000253754 KIF2CQ99661 725 aa23.21■■□□□ 1.31
PDLIM4-201ENST00000253754 GSE1Q14687 1217 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 ABCA3Q99758 1704 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 LMO7Q8WWI1 1683 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 HDGFL1Q5TGJ6 251 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 HSCBQ8IWL3 235 aa23.2■■□□□ 1.3
PDLIM4-201ENST00000253754 KCNQ3O43525 872 aa23.19■■□□□ 1.3
PDLIM4-201ENST00000253754 GNAI2P04899 355 aa23.19■■□□□ 1.3
PDLIM4-201ENST00000253754 C1orf141Q5JVX7 400 aa23.19■■□□□ 1.3
PDLIM4-201ENST00000253754 PHAXQ9H814 394 aaKnown RBP23.19■■□□□ 1.3
PDLIM4-201ENST00000253754 BABAM1Q9NWV8 329 aa23.19■■□□□ 1.3
PDLIM4-201ENST00000253754 MPRIPQ6WCQ1 1025 aa23.18■■□□□ 1.3
PDLIM4-201ENST00000253754 HMMRO75330 724 aa23.17■■□□□ 1.3
PDLIM4-201ENST00000253754 EIF2S2P20042 333 aaKnown RBP23.17■■□□□ 1.3
PDLIM4-201ENST00000253754 EXOC6BQ9Y2D4 811 aa23.17■■□□□ 1.3
PDLIM4-201ENST00000253754 TATP17735 454 aaPredicted RBP23.16■■□□□ 1.3
PDLIM4-201ENST00000253754 RBM42Q9BTD8 480 aaKnown RBP23.16■■□□□ 1.3
PDLIM4-201ENST00000253754 PNMA6EA0A0J9YXQ4 647 aa23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 CD2BP2O95400 341 aaKnown RBP23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 EIF4A1P60842 406 aaKnown RBP23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 AHDC1Q5TGY3 1603 aaPredicted RBP23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 SDSP20132 328 aa23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 TOM1L2Q6ZVM7 507 aa23.15■■□□□ 1.3
PDLIM4-201ENST00000253754 SOS1Q07889 1333 aaPredicted RBP23.14■■□□□ 1.3
PDLIM4-201ENST00000253754 WDR17Q8IZU2 1322 aa23.14■■□□□ 1.3
PDLIM4-201ENST00000253754 LRRFIP2Q9Y608 721 aaKnown RBP23.13■■□□□ 1.29
PDLIM4-201ENST00000253754 MEGF6O75095 1541 aa23.13■■□□□ 1.29
PDLIM4-201ENST00000253754 STRN4Q9NRL3 753 aa23.13■■□□□ 1.29
PDLIM4-201ENST00000253754 GNAI3P08754 354 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 TEFQ10587 303 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 TSHZ3Q63HK5 1081 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 SNX21Q969T3 373 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 COL5A2P05997 1499 aaPredicted RBP23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 USP44Q9H0E7 712 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 CHPF2Q9P2E5 772 aa23.12■■□□□ 1.29
PDLIM4-201ENST00000253754 BTBD11A6QL63 1104 aa23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 RNMTO43148 476 aaKnown RBP23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 ANXA1P04083 346 aa23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 EVA1CP58658 441 aa23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 SPG7Q9UQ90 795 aa23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 NUTM2BA6NNL0 878 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 NUTM2EB1AL46 878 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 NUTM2AQ8IVF1 878 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 PHLPP1O60346 1717 aa23.11■■□□□ 1.29
PDLIM4-201ENST00000253754 ATP8B2P98198 1209 aa23.09■■□□□ 1.29
PDLIM4-201ENST00000253754 CHMP5Q9NZZ3 219 aa23.09■■□□□ 1.29
PDLIM4-201ENST00000253754 LARP1Q6PKG0 1096 aaKnown RBP23.08■■□□□ 1.29
PDLIM4-201ENST00000253754 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms