RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.95■■■□□ 2.22
CDX1-201ENST00000231656 TAF7Q15545 349 aaPredicted RBP28.94■■■□□ 2.22
CDX1-201ENST00000231656 CCDC9Q9Y3X0 531 aaKnown RBP28.94■■■□□ 2.22
CDX1-201ENST00000231656 KDM6AO15550 1401 aaPredicted RBP28.93■■■□□ 2.22
CDX1-201ENST00000231656 ZKSCAN2Q63HK3 967 aa28.93■■■□□ 2.22
CDX1-201ENST00000231656 TSPYL4Q9UJ04 414 aa28.93■■■□□ 2.22
CDX1-201ENST00000231656 USP21Q9UK80 565 aa28.93■■■□□ 2.22
CDX1-201ENST00000231656 TCERG1O14776 1098 aaKnown RBP28.92■■■□□ 2.22
CDX1-201ENST00000231656 TEFQ10587 303 aa28.92■■■□□ 2.22
CDX1-201ENST00000231656 VPS72Q15906 364 aa28.92■■■□□ 2.22
CDX1-201ENST00000231656 ALDH1L2Q3SY69 923 aa28.91■■■□□ 2.22
CDX1-201ENST00000231656 HSP90AB1P08238 724 aaKnown RBP28.9■■■□□ 2.22
CDX1-201ENST00000231656 AAMPQ13685 434 aa28.9■■■□□ 2.22
CDX1-201ENST00000231656 CLUAP1Q96AJ1 413 aa28.9■■■□□ 2.22
CDX1-201ENST00000231656 ZNF428Q96B54 188 aa28.9■■■□□ 2.22
CDX1-201ENST00000231656 DCAF5Q96JK2 942 aa28.9■■■□□ 2.22
CDX1-201ENST00000231656 CDCA7Q9BWT1 371 aaPredicted RBP28.9■■■□□ 2.22
CDX1-201ENST00000231656 BABAM1Q9NWV8 329 aa28.9■■■□□ 2.22
CDX1-201ENST00000231656 SIPA1L3O60292 1781 aaPredicted RBP28.9■■■□□ 2.22
CDX1-201ENST00000231656 DDX54Q8TDD1 881 aaKnown RBP28.89■■■□□ 2.22
CDX1-201ENST00000231656 BARGINQ6ZT62 677 aa28.88■■■□□ 2.21
CDX1-201ENST00000231656 AFF2P51816 1311 aa28.88■■■□□ 2.21
CDX1-201ENST00000231656 MS4A1P11836 297 aa28.88■■■□□ 2.21
CDX1-201ENST00000231656 TSPYL6Q8N831 410 aa28.88■■■□□ 2.21
CDX1-201ENST00000231656 C8orf58Q8NAV2 365 aa28.88■■■□□ 2.21
CDX1-201ENST00000231656 KDM3BQ7LBC6 1761 aa28.86■■■□□ 2.21
CDX1-201ENST00000231656 NKX1-1Q15270 411 aaPredicted RBP28.86■■■□□ 2.21
CDX1-201ENST00000231656 DZIP1LQ8IYY4 767 aaKnown RBP28.86■■■□□ 2.21
CDX1-201ENST00000231656 EXOC5O00471 708 aa28.85■■■□□ 2.21
CDX1-201ENST00000231656 VAMP4O75379 141 aa28.85■■■□□ 2.21
CDX1-201ENST00000231656 BRPF1P55201 1214 aaPredicted RBP28.85■■■□□ 2.21
CDX1-201ENST00000231656 KIF16BQ96L93 1317 aa28.85■■■□□ 2.21
CDX1-201ENST00000231656 ELL2O00472 640 aaPredicted RBP28.85■■■□□ 2.21
CDX1-201ENST00000231656 TRIM27P14373 513 aa28.85■■■□□ 2.21
CDX1-201ENST00000231656 SLC52A2Q9HAB3 445 aa28.85■■■□□ 2.21
CDX1-201ENST00000231656 TNS2Q63HR2 1409 aa28.84■■■□□ 2.21
CDX1-201ENST00000231656 MRC1P22897 1456 aa28.84■■■□□ 2.21
CDX1-201ENST00000231656 MVPQ14764 893 aaKnown RBP28.84■■■□□ 2.21
CDX1-201ENST00000231656 KRT24Q2M2I5 525 aa28.84■■■□□ 2.21
CDX1-201ENST00000231656 TWISTNBQ3B726 338 aaPredicted RBP28.84■■■□□ 2.21
CDX1-201ENST00000231656 ATF7IPQ6VMQ6 1270 aa28.84■■■□□ 2.21
CDX1-201ENST00000231656 FBXO41Q8TF61 875 aa28.84■■■□□ 2.21
CDX1-201ENST00000231656 NOB1Q9ULX3 412 aaKnown RBP28.84■■■□□ 2.21
CDX1-201ENST00000231656 BTBD11A6QL63 1104 aa28.83■■■□□ 2.21
CDX1-201ENST00000231656 FTSJ3Q8IY81 847 aaKnown RBP28.82■■■□□ 2.2
CDX1-201ENST00000231656 SKAP1Q86WV1 359 aa28.81■■■□□ 2.2
CDX1-201ENST00000231656 NFATC2IPQ8NCF5 419 aa28.81■■■□□ 2.2
CDX1-201ENST00000231656 IGHDP01880 384 aa28.8■■■□□ 2.2
CDX1-201ENST00000231656 DDB1Q16531 1140 aa28.8■■■□□ 2.2
CDX1-201ENST00000231656 FAM98CQ17RN3 349 aaKnown RBP28.8■■■□□ 2.2
CDX1-201ENST00000231656 IPO8O15397 1037 aaKnown RBP28.79■■■□□ 2.2
CDX1-201ENST00000231656 ERVV-2B6SEH9 535 aa28.78■■■□□ 2.2
CDX1-201ENST00000231656 MRPL50Q8N5N7 158 aaKnown RBP28.78■■■□□ 2.2
CDX1-201ENST00000231656 TOGARAM1Q9Y4F4 1720 aa28.78■■■□□ 2.2
CDX1-201ENST00000231656 CABP4P57796 275 aa28.78■■■□□ 2.2
CDX1-201ENST00000231656 KCNQ3O43525 872 aa28.77■■■□□ 2.2
CDX1-201ENST00000231656 ATRNO75882 1429 aa28.77■■■□□ 2.2
CDX1-201ENST00000231656 PCDHB15Q9Y5E8 787 aa28.76■■■□□ 2.19
CDX1-201ENST00000231656 GLI3P10071 1580 aa28.76■■■□□ 2.19
CDX1-201ENST00000231656 EIF4A1P60842 406 aaKnown RBP28.75■■■□□ 2.19
CDX1-201ENST00000231656 GJD4Q96KN9 370 aaPredicted RBP28.75■■■□□ 2.19
CDX1-201ENST00000231656 TRPC5Q9UL62 973 aaPredicted RBP28.75■■■□□ 2.19
CDX1-201ENST00000231656 DDX19BQ9UMR2 479 aa28.73■■■□□ 2.19
CDX1-201ENST00000231656 KAT6BQ8WYB5 2073 aa28.72■■■□□ 2.19
CDX1-201ENST00000231656 ZNF790Q6PG37 636 aa28.72■■■□□ 2.19
CDX1-201ENST00000231656 TMEM57Q8N5G2 664 aa28.72■■■□□ 2.19
CDX1-201ENST00000231656 ARHGAP45Q92619 1136 aa28.72■■■□□ 2.19
CDX1-201ENST00000231656 THSD7AQ9UPZ6 1657 aa28.72■■■□□ 2.19
CDX1-201ENST00000231656 SLC39A6Q13433 755 aa28.71■■■□□ 2.19
CDX1-201ENST00000231656 ITGB4P16144 1822 aa28.71■■■□□ 2.19
CDX1-201ENST00000231656 SOS1Q07889 1333 aaPredicted RBP28.71■■■□□ 2.19
CDX1-201ENST00000231656 MARCH10Q8NA82 808 aaPredicted RBP28.7■■■□□ 2.19
CDX1-201ENST00000231656 PDE4AP27815 886 aa28.7■■■□□ 2.18
CDX1-201ENST00000231656 QTRT2Q9H974 415 aaKnown RBP28.7■■■□□ 2.18
CDX1-201ENST00000231656 ITPRIPQ8IWB1 547 aa28.69■■■□□ 2.18
CDX1-201ENST00000231656 BACH2Q9BYV9 841 aa28.68■■■□□ 2.18
CDX1-201ENST00000231656 HEG1Q9ULI3 1381 aa28.68■■■□□ 2.18
CDX1-201ENST00000231656 A0A0G2JS52 829 aa28.67■■■□□ 2.18
CDX1-201ENST00000231656 MYT1Q01538 1121 aa28.67■■■□□ 2.18
CDX1-201ENST00000231656 TMOD3Q9NYL9 352 aa28.66■■■□□ 2.18
CDX1-201ENST00000231656 DOT1LQ8TEK3 1739 aa28.65■■■□□ 2.18
CDX1-201ENST00000231656 HOXB7P09629 217 aa28.65■■■□□ 2.18
CDX1-201ENST00000231656 TTC5Q8N0Z6 440 aa28.65■■■□□ 2.18
CDX1-201ENST00000231656 PAPPAQ13219 1627 aa28.65■■■□□ 2.18
CDX1-201ENST00000231656 ONECUT3O60422 494 aaPredicted RBP28.65■■■□□ 2.18
CDX1-201ENST00000231656 GIGYF1O75420 1035 aaPredicted RBP28.64■■■□□ 2.18
CDX1-201ENST00000231656 RWDD1Q9H446 243 aaPredicted RBP28.63■■■□□ 2.17
CDX1-201ENST00000231656 ZBTB40Q9NUA8 1239 aa28.63■■■□□ 2.17
CDX1-201ENST00000231656 ABCC4O15439 1325 aa28.63■■■□□ 2.17
CDX1-201ENST00000231656 UBR2Q8IWV8 1755 aa28.63■■■□□ 2.17
CDX1-201ENST00000231656 CACNA1FO60840 1977 aa28.63■■■□□ 2.17
CDX1-201ENST00000231656 PIGBQ92521 554 aa28.62■■■□□ 2.17
CDX1-201ENST00000231656 ZNF496Q96IT1 587 aaPredicted RBP28.62■■■□□ 2.17
CDX1-201ENST00000231656 CCDC30Q5VVM6 783 aa28.62■■■□□ 2.17
CDX1-201ENST00000231656 ZNF772Q68DY9 489 aaPredicted RBP28.61■■■□□ 2.17
CDX1-201ENST00000231656 BCL9O00512 1426 aa28.61■■■□□ 2.17
CDX1-201ENST00000231656 HDGFL1Q5TGJ6 251 aa28.6■■■□□ 2.17
CDX1-201ENST00000231656 FMNL2Q96PY5 1086 aa28.6■■■□□ 2.17
CDX1-201ENST00000231656 PRIM1P49642 420 aaKnown RBP28.6■■■□□ 2.17
CDX1-201ENST00000231656 NECTIN2Q92692 538 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms