RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Cntnap1O54991 1385 aa29.02■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Shank2Q80Z38 1476 aa29.02■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Lrp6O88572 1613 aa29.01■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Kcnh4A2A5F7 1018 aa29.01■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Ubr2Q6WKZ8 1755 aa29■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Nhsl1Q8CAF4 1587 aa29■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Fam83gQ5SWY7 812 aa29■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Ric3Q8BPM6 367 aa28.99■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Dlg5E9Q9R9 1921 aa28.99■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Fkbp4P30416 458 aa28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Sf3b2Q3UJB0 878 aaKnown RBP28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Sv2bQ8BG39 683 aa28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Ints5Q8CHT3 1018 aa28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Elp1Q7TT37 1333 aaKnown RBP28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Sik1Q60670 779 aa28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Pm20d1Q8C165 503 aa28.98■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Fer1l6E0CZ42 1862 aa28.97■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Duxf3A0A0N4SV92 674 aa28.97■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Emilin2Q8K482 1074 aa28.97■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Bcl2l13P59017 434 aa28.97■■■□□ 2.23
Upf3a-201ENSMUST00000043767 Ankrd23Q812A3 306 aa28.94■■■□□ 2.22
Upf3a-201ENSMUST00000043767 GckrQ91X44 587 aa28.94■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Ginm1Q91WR6 327 aa28.93■■■□□ 2.22
Upf3a-201ENSMUST00000043767 PigbQ9JJQ0 542 aa28.92■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Pnpla7A2AJ88 1352 aa28.92■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Mast2Q60592 1734 aa28.92■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Exoc5Q3TPX4 708 aa28.92■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Ccnl1Q52KE7 532 aaKnown RBP28.9■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Ccdc9Q8VC31 543 aaKnown RBP28.9■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Sgsm1Q8BPQ7 1093 aa28.9■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Pdia6Q922R8 440 aaKnown RBP28.9■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Efcab2Q9CQ46 164 aa28.9■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Kat6bQ8BRB7 1872 aa28.89■■■□□ 2.22
Upf3a-201ENSMUST00000043767 ApobrQ8VBT6 942 aa28.89■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Tnrc6cQ3UHC0 1690 aaKnown RBP28.89■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Kdm2bQ6P1G2 1309 aa28.89■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Cacna1sQ02789 1880 aa28.89■■■□□ 2.22
Upf3a-201ENSMUST00000043767 Mst1rQ62190 1378 aa28.89■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Cnksr1A2A9K7 700 aa28.89■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Iqsec3Q3TES0 1195 aa28.89■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Taf7Q9R1C0 341 aa28.89■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Cypt2Q6P924 180 aa28.88■■■□□ 2.21
Upf3a-201ENSMUST00000043767 InhbeO08717 350 aa28.87■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Cyp2d11P24457 504 aa28.87■■■□□ 2.21
Upf3a-201ENSMUST00000043767 MvpQ9EQK5 861 aa28.87■■■□□ 2.21
Upf3a-201ENSMUST00000043767 PappaQ8R4K8 1624 aa28.87■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Crb1Q8VHS2 1405 aa28.86■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Nwd2Q6P5U7 1742 aa28.86■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Ankrd44B2RXR6 993 aa28.86■■■□□ 2.21
Upf3a-201ENSMUST00000043767 CoilQ5SU73 570 aa28.86■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Ddb1Q3U1J4 1140 aaKnown RBP28.85■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Tmem119Q8R138 280 aa28.85■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Cnnm1Q0GA42 951 aa28.85■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Rlbp1Q9Z275 317 aa28.85■■■□□ 2.21
Upf3a-201ENSMUST00000043767 PsapQ61207 557 aaKnown RBP28.84■■■□□ 2.21
Upf3a-201ENSMUST00000043767 SympkQ80X82 1284 aa28.84■■■□□ 2.21
Upf3a-201ENSMUST00000043767 TefQ9JLC6 301 aa28.84■■■□□ 2.21
Upf3a-201ENSMUST00000043767 AceP09470 1312 aa28.84■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Disp3A3KFU9 1347 aa28.83■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Prkab2Q6PAM0 271 aa28.83■■■□□ 2.21
Upf3a-201ENSMUST00000043767 Tjp1P39447 1745 aaKnown RBP28.83■■■□□ 2.21
Upf3a-201ENSMUST00000043767 BcorQ8CGN4 1759 aa28.81■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Vps33bP59016 617 aa28.79■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Ltbp1Q8CG19 1712 aa28.78■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Cap2Q9CYT6 476 aa28.78■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Igfbp6P47880 238 aa28.78■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Tiam2Q6ZPF3 1715 aa28.77■■■□□ 2.2
Upf3a-201ENSMUST00000043767 Slc39a6Q8C145 765 aa28.76■■■□□ 2.19
Upf3a-201ENSMUST00000043767 AampJ3QN89 436 aa28.76■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Phf23Q8BSN5 401 aa28.76■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Armcx1Q9CX83 456 aa28.75■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Hdac6Q9Z2V5 1149 aa28.75■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Atg3Q9CPX6 314 aa28.74■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Echdc1Q9D9V3 322 aa28.74■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Fnbp4Q6ZQ03 1031 aa28.73■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Shank3Q4ACU6 1730 aa28.73■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Flad1Q8R123 492 aa28.71■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Cluap1Q8R3P7 413 aa28.71■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Adcy9P51830 1353 aa28.71■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Col4a1P02463 1669 aa28.7■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Smg7Q5RJH6 1138 aaKnown RBP28.7■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Clcn1Q64347 994 aa28.7■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Bsdc1Q80Y55 427 aa28.7■■■□□ 2.19
Upf3a-201ENSMUST00000043767 Ttll7A4Q9F0 912 aa28.7■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Hsp90aa1P07901 733 aaKnown RBP28.7■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Aldh1l2Q8K009 923 aa28.7■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Exoc6bA6H5Z3 810 aa28.69■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Flt4P35917 1363 aa28.69■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Smc5Q8CG46 1101 aaKnown RBP28.68■■■□□ 2.18
Upf3a-201ENSMUST00000043767 AU019823E9PUQ3 292 aa28.68■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Dmrt2Q8BG36 561 aa28.68■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Irf9Q61179 399 aa28.67■■■□□ 2.18
Upf3a-201ENSMUST00000043767 GakQ99KY4 1305 aa28.66■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Map3k2Q61083 619 aa28.66■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Dcaf5Q80T85 946 aa28.66■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Chmp4bQ9D8B3 224 aaKnown RBP28.66■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Syde2E9PUP1 1314 aa28.65■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Hspa2P17156 633 aa28.65■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Prkar2bP31324 416 aa28.65■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Triml2E9PW10 424 aa28.64■■■□□ 2.18
Retrieved 100 of 22,080 RNA–protein pairs in 141.8 ms