Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMD1Q9UGP4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AL691432.2-201ENST00000607222 2038 ntBASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 DRAXINP1-201ENST00000437611 948 ntBASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 KRT18P31-201ENST00000506277 1292 ntBASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AL157888.1-201ENST00000631930 593 ntBASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 AC009237.14-201ENST00000609975 1594 ntBASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMD1Q9UGP4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 MIR662-201ENST00000384847 95 ntBASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AL023284.2-201ENST00000405850 579 ntBASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 SEC1P-202ENST00000473944 940 ntBASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AL391807.1-203ENST00000604392 2365 ntBASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 AC020907.5-201ENST00000624372 1936 ntBASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMD1Q9UGP4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 TOB2P1-201ENST00000469761 992 ntBASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 RNF126P1-202ENST00000569893 925 ntBASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 AL136038.4-201ENST00000603606 1261 ntBASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMD1Q9UGP4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMD1Q9UGP4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms