Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 UNC93B2-201ENST00000285383 730 ntBASIC19.36■□□□□ 0.69
USP29Q9HBJ7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 AC068587.9-201ENST00000641814 219 ntBASIC19.36■□□□□ 0.69
USP29Q9HBJ7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.36■□□□□ 0.69
USP29Q9HBJ7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP29Q9HBJ7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 KRT8P3-201ENST00000519669 1449 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 AC011506.1-201ENST00000474329 610 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 AC145285.6-201ENST00000604632 637 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 AL031985.4-201ENST00000642138 673 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 MTMR9LP-203ENST00000426597 1545 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 KRT8P32-201ENST00000512863 1461 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.35■□□□□ 0.69
USP29Q9HBJ7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP29Q9HBJ7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 AC026271.3-201ENST00000571884 352 ntBASIC19.34■□□□□ 0.69
USP29Q9HBJ7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP29Q9HBJ7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
USP29Q9HBJ7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 RBM17P1-201ENST00000453646 1190 ntBASIC19.33■□□□□ 0.68
USP29Q9HBJ7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 AC011298.2-201ENST00000617989 482 ntBASIC19.33■□□□□ 0.68
USP29Q9HBJ7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP29Q9HBJ7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP29Q9HBJ7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP29Q9HBJ7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.32■□□□□ 0.68
USP29Q9HBJ7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP29Q9HBJ7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.32■□□□□ 0.68
USP29Q9HBJ7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms