Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF41Q9H4P4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF41Q9H4P4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF41Q9H4P4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF41Q9H4P4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF41Q9H4P4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 NFYC-AS1-201ENST00000606277 1687 ntBASIC22.14■■□□□ 1.14
RNF41Q9H4P4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.14■■□□□ 1.14
RNF41Q9H4P4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 FAM210CP-201ENST00000445714 574 ntBASIC22.14■■□□□ 1.13
RNF41Q9H4P4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 AC120498.9-201ENST00000339021 3867 ntBASIC22.14■■□□□ 1.13
RNF41Q9H4P4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 AC018445.3-201ENST00000624177 1945 ntBASIC22.14■■□□□ 1.13
RNF41Q9H4P4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF41Q9H4P4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.13■■□□□ 1.13
RNF41Q9H4P4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 KRT18P21-201ENST00000515767 1272 ntBASIC22.12■■□□□ 1.13
RNF41Q9H4P4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 RN7SL850P-201ENST00000579959 291 ntBASIC22.12■■□□□ 1.13
RNF41Q9H4P4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 AL357033.4-201ENST00000617703 1807 ntBASIC22.12■■□□□ 1.13
RNF41Q9H4P4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF41Q9H4P4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 AP000974.1-201ENST00000623909 2387 ntBASIC22.11■■□□□ 1.13
RNF41Q9H4P4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 AC034236.2-201ENST00000606662 1610 ntBASIC22.11■■□□□ 1.13
RNF41Q9H4P4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC22.11■■□□□ 1.13
RNF41Q9H4P4 TMPOP1-202ENST00000424642 1267 ntBASIC22.11■■□□□ 1.13
RNF41Q9H4P4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
RNF41Q9H4P4 COX11P1-201ENST00000489116 835 ntBASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms