Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 AKR1C7P-201ENST00000305623 895 ntBASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 AC117500.6-201ENST00000624871 588 ntBASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SLC44A3Q8N4M1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 TSPY12P-201ENST00000421279 868 ntBASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 GPR32P1-201ENST00000601788 811 ntBASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 AC139530.3-201ENST00000620344 690 ntBASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 AF228730.7-201ENST00000641842 219 ntBASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 RCC2P3-201ENST00000418112 1537 ntBASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.2■□□□□ 0.66
SLC44A3Q8N4M1 AC099778.1-201ENST00000568593 1911 ntBASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 AC124864.1-201ENST00000623408 392 ntBASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 AL512353.2-201ENST00000448759 1962 ntBASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SLC44A3Q8N4M1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SAPCD2P3-201ENST00000455031 850 ntBASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SLC44A3Q8N4M1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms