Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 AC007967.2-201ENST00000432613 625 ntBASIC18.21■□□□□ 0.51
RIF1Q5UIP0 UNC93B6-202ENST00000528242 690 ntBASIC18.21■□□□□ 0.51
RIF1Q5UIP0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.21■□□□□ 0.51
RIF1Q5UIP0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 AF228730.6-201ENST00000641497 218 ntBASIC18.21■□□□□ 0.5
RIF1Q5UIP0 AC084121.3-201ENST00000641716 218 ntBASIC18.21■□□□□ 0.5
RIF1Q5UIP0 AC105233.6-201ENST00000642093 218 ntBASIC18.21■□□□□ 0.5
RIF1Q5UIP0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
RIF1Q5UIP0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AC005034.1-201ENST00000426657 489 ntBASIC18.2■□□□□ 0.5
RIF1Q5UIP0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AJ011932.1-201ENST00000621707 465 ntBASIC18.2■□□□□ 0.5
RIF1Q5UIP0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RIF1Q5UIP0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 AC104417.2-201ENST00000562989 1793 ntBASIC18.19■□□□□ 0.5
RIF1Q5UIP0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 AC007274.1-201ENST00000439805 662 ntBASIC18.19■□□□□ 0.5
RIF1Q5UIP0 YBX1P5-201ENST00000509441 847 ntBASIC18.19■□□□□ 0.5
RIF1Q5UIP0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RIF1Q5UIP0 AC002310.6-201ENST00000624451 1377 ntBASIC18.19■□□□□ 0.5
RIF1Q5UIP0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
RIF1Q5UIP0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms