Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 FEM1AP3-201ENST00000403722 1741 ntBASIC19.96■□□□□ 0.79
USP41Q3LFD5 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 NPAP1P7-201ENST00000613027 823 ntBASIC19.96■□□□□ 0.79
USP41Q3LFD5 AC079602.3-201ENST00000623931 403 ntBASIC19.96■□□□□ 0.79
USP41Q3LFD5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 AC008556.1-201ENST00000610908 2040 ntBASIC19.96■□□□□ 0.79
USP41Q3LFD5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
USP41Q3LFD5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP41Q3LFD5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 HLA-F-220ENST00000434407 884 ntBASIC19.95■□□□□ 0.78
USP41Q3LFD5 KRT18P23-201ENST00000435622 1283 ntBASIC19.95■□□□□ 0.78
USP41Q3LFD5 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 BX276092.5-203ENST00000456199 560 ntBASIC19.95■□□□□ 0.78
USP41Q3LFD5 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 AL121894.2-201ENST00000602977 491 ntBASIC19.95■□□□□ 0.78
USP41Q3LFD5 AL121672.3-201ENST00000608644 468 ntBASIC19.95■□□□□ 0.78
USP41Q3LFD5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.95■□□□□ 0.78
USP41Q3LFD5 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP41Q3LFD5 PCDHAC2-203ENST00000615316 3011 ntBASIC19.94■□□□□ 0.78
USP41Q3LFD5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 AL136038.4-201ENST00000603606 1261 ntBASIC19.94■□□□□ 0.78
USP41Q3LFD5 AC092119.3-201ENST00000612618 583 ntBASIC19.94■□□□□ 0.78
USP41Q3LFD5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.94■□□□□ 0.78
USP41Q3LFD5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP41Q3LFD5 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 HOXB1-202ENST00000577092 1414 ntBASIC19.93■□□□□ 0.78
USP41Q3LFD5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 AL162741.1-201ENST00000565563 1558 ntBASIC19.93■□□□□ 0.78
USP41Q3LFD5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP41Q3LFD5 TSSC2-201ENST00000450217 709 ntBASIC19.93■□□□□ 0.78
USP41Q3LFD5 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.93■□□□□ 0.78
USP41Q3LFD5 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms