Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 HTR5BP-201ENST00000430851 1154 ntBASIC13.43□□□□□ -0.26
COL7A1Q02388 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 AC096582.2-201ENST00000510860 516 ntBASIC13.43□□□□□ -0.26
COL7A1Q02388 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL7A1Q02388 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL7A1Q02388 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
COL7A1Q02388 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.43□□□□□ -0.26
COL7A1Q02388 AC116407.3-201ENST00000623905 1129 ntBASIC13.43□□□□□ -0.26
COL7A1Q02388 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 PBK-203ENST00000522944 1499 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 MED15P5-201ENST00000423150 992 ntBASIC13.42□□□□□ -0.26
COL7A1Q02388 DNAJB3-202ENST00000449667 1266 ntBASIC13.42□□□□□ -0.26
COL7A1Q02388 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.42□□□□□ -0.26
COL7A1Q02388 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 AC008608.2-201ENST00000606089 416 ntBASIC13.42□□□□□ -0.26
COL7A1Q02388 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL7A1Q02388 HES2-202ENST00000377836 507 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.42□□□□□ -0.26
COL7A1Q02388 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.42□□□□□ -0.26
COL7A1Q02388 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 AC009237.14-201ENST00000609975 1594 ntBASIC13.42□□□□□ -0.26
COL7A1Q02388 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL7A1Q02388 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 YBX2P1-201ENST00000394192 760 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 AC004832.2-201ENST00000426397 482 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 AC004967.1-201ENST00000453589 447 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 RFPL4AP1-201ENST00000530883 850 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AC005332.3-201ENST00000589904 676 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL7A1Q02388 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 CYMP-203ENST00000474680 1263 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.41□□□□□ -0.26
COL7A1Q02388 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AL355877.3-201ENST00000622820 899 ntBASIC13.41□□□□□ -0.26
COL7A1Q02388 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL7A1Q02388 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms